diff options
| author |   David Seifert <soap@gentoo.org> | 2017-09-02 14:33:32 +0200 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2017-09-02 14:35:41 +0200 |
| commit | a26495e2ae69026f4ad9d7a730611a1cac92448e (patch) | |
| tree | 6618eaf5c33287abd81fc51f7c79a5bd9179c8dd /sci-biology/bcftools/files | |
| parent | net-misc/chrony: Update live ebuild. (diff) | |
| download | gentoo-a26495e2ae69026f4ad9d7a730611a1cac92448e.tar.gz gentoo-a26495e2ae69026f4ad9d7a730611a1cac92448e.tar.bz2 gentoo-a26495e2ae69026f4ad9d7a730611a1cac92448e.zip | |
sci-biology/bcftools: Add 1.5 from sci overlay
Package-Manager: Portage-2.3.8, Repoman-2.3.3
Diffstat (limited to 'sci-biology/bcftools/files')
| -rw-r--r-- | sci-biology/bcftools/files/bcftools-1.5-buildsystem.patch | 10 | ||||
| -rw-r--r-- | sci-biology/bcftools/files/bcftools-1.5-fix-shebangs.patch | 24 |
2 files changed, 34 insertions, 0 deletions
diff --git a/sci-biology/bcftools/files/bcftools-1.5-buildsystem.patch b/sci-biology/bcftools/files/bcftools-1.5-buildsystem.patch new file mode 100644 index 000000000000..304fc03e7441 --- /dev/null +++ b/sci-biology/bcftools/files/bcftools-1.5-buildsystem.patch @@ -0,0 +1,10 @@ +--- a/Makefile ++++ b/Makefile +@@ -275,7 +275,6 @@ + $(INSTALL_PROGRAM) $(PROGRAMS) $(DESTDIR)$(bindir) + $(INSTALL_SCRIPT) $(MISC_SCRIPTS) $(DESTDIR)$(misc_bindir) + $(INSTALL_MAN) doc/bcftools.1 $(DESTDIR)$(man1dir) +- $(INSTALL_PROGRAM) plugins/*.so $(DESTDIR)$(plugindir) + + clean: testclean clean-plugins + -rm -f gmon.out *.o *~ $(PROG) version.h plugins/*.so plugins/*.P diff --git a/sci-biology/bcftools/files/bcftools-1.5-fix-shebangs.patch b/sci-biology/bcftools/files/bcftools-1.5-fix-shebangs.patch new file mode 100644 index 000000000000..c6cfc8b991d3 --- /dev/null +++ b/sci-biology/bcftools/files/bcftools-1.5-fix-shebangs.patch @@ -0,0 +1,24 @@ +--- a/misc/guess-ploidy.py ++++ b/misc/guess-ploidy.py +@@ -1,4 +1,4 @@ +-#!/usr/bin/env python ++#!/usr/bin/env python2.7 + # + # Plot the output of "bcftools +guess-ploidy -v" + # +--- a/misc/plot-roh.py ++++ b/misc/plot-roh.py +@@ -1,4 +1,4 @@ +-#!/usr/bin/python ++#!/usr/bin/env python2.7 + + import glob, gzip, csv, sys, os, copy, re + csv.register_dialect('tab', delimiter='\t', quoting=csv.QUOTE_NONE) +--- a/misc/vcfutils.pl ++++ b/misc/vcfutils.pl +@@ -1,4 +1,4 @@ +-#!/usr/bin/perl -w ++#!/usr/bin/env perl + # + # Copyright (C) 2010 Broad Institute. + # Copyright (C) 2011, 2014 Genome Research Ltd. |