diff options
| author |   Ted Tanberry <ted.tanberry@gmail.com> | 2015-10-11 10:04:43 +0200 |
|---|---|---|
| committer |   Justin Lecher <jlec@gentoo.org> | 2015-10-14 14:47:58 +0200 |
| commit | 50fe91c03b9c8431a871463ee75ae68bdfc8a171 (patch) | |
| tree | a24a4853e88633356002bf9d088f4e2a23b4c306 /sci-biology/bowtie/bowtie-0.12.8.ebuild | |
| parent | sci-biology/bowtie-2.2.6: Enable 'tbb' USE flag by default (diff) | |
| download | gentoo-50fe91c03b9c8431a871463ee75ae68bdfc8a171.tar.gz gentoo-50fe91c03b9c8431a871463ee75ae68bdfc8a171.tar.bz2 gentoo-50fe91c03b9c8431a871463ee75ae68bdfc8a171.zip | |
sci-biology/bowtie: bring back stable bowtie-0.12.8
bowtie-0.12.8 is the only stable variant and removing it
breaks the stable depgraph.
Diffstat (limited to 'sci-biology/bowtie/bowtie-0.12.8.ebuild')
| -rw-r--r-- | sci-biology/bowtie/bowtie-0.12.8.ebuild | 44 |
1 files changed, 44 insertions, 0 deletions
diff --git a/sci-biology/bowtie/bowtie-0.12.8.ebuild b/sci-biology/bowtie/bowtie-0.12.8.ebuild new file mode 100644 index 000000000000..c26c986ed194 --- /dev/null +++ b/sci-biology/bowtie/bowtie-0.12.8.ebuild @@ -0,0 +1,44 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=4 + +inherit eutils toolchain-funcs + +DESCRIPTION="An ultrafast memory-efficient short read aligner" +HOMEPAGE="http://bowtie-bio.sourceforge.net/" +SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip" + +LICENSE="Artistic" +SLOT="0" +IUSE="" +KEYWORDS="amd64 x86 ~x64-macos" + +DEPEND="app-arch/unzip" +RDEPEND="" + +# NB: Bundles code from Maq (http://maq.sf.net) and the SeqAn library (http://www.seqan.de) +# TODO: properly report system CFLAGS in -DCOMPILE_OPTIONS + +src_prepare() { + epatch "${FILESDIR}"/${P}-gcc-47.patch +} + +src_compile() { + unset CFLAGS + emake \ + CC="$(tc-getCC)" \ + CPP="$(tc-getCXX)" \ + CXX="$(tc-getCXX)" \ + EXTRA_FLAGS="${LDFLAGS}" \ + RELEASE_FLAGS="" +} + +src_install() { + dobin bowtie bowtie-* + exeinto /usr/share/${PN}/scripts + doexe scripts/* + newman MANUAL bowtie.1 + dodoc AUTHORS NEWS TUTORIAL +} |