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| author |   Ted Tanberry <ted.tanberry@gmail.com> | 2015-10-10 21:04:45 +0200 |
|---|---|---|
| committer |   Justin Lecher <jlec@gentoo.org> | 2015-10-14 14:47:58 +0200 |
| commit | ddbfba3594bda0b32f359e057555d477ffbced1e (patch) | |
| tree | ea878cf553eda9db8df5ca4d710fd83d4ef22f54 /sci-biology/bowtie/bowtie-1.0.0.ebuild | |
| parent | x11-libs/gdk-pixbuf: run glibc-specific test only on glibc (diff) | |
| download | gentoo-ddbfba3594bda0b32f359e057555d477ffbced1e.tar.gz gentoo-ddbfba3594bda0b32f359e057555d477ffbced1e.tar.bz2 gentoo-ddbfba3594bda0b32f359e057555d477ffbced1e.zip | |
sci-biology/bowtie: version bump, SLOT major version
sci-biology/bowtie is now SLOTed, in order to allow for a
parallel installation with bowtie2. In addition, the latest
bowtie now supports dev-cpp/tbb with 'tbb' USE flag.
Diffstat (limited to 'sci-biology/bowtie/bowtie-1.0.0.ebuild')
| -rw-r--r-- | sci-biology/bowtie/bowtie-1.0.0.ebuild | 42 |
1 files changed, 0 insertions, 42 deletions
diff --git a/sci-biology/bowtie/bowtie-1.0.0.ebuild b/sci-biology/bowtie/bowtie-1.0.0.ebuild deleted file mode 100644 index b8181190243c..000000000000 --- a/sci-biology/bowtie/bowtie-1.0.0.ebuild +++ /dev/null @@ -1,42 +0,0 @@ -# Copyright 1999-2013 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -inherit eutils toolchain-funcs - -DESCRIPTION="An ultrafast memory-efficient short read aligner" -HOMEPAGE="http://bowtie-bio.sourceforge.net/" -SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip" - -LICENSE="Artistic" -SLOT="0" -IUSE="" -KEYWORDS="~amd64 ~x86 ~x64-macos" - -DEPEND="app-arch/unzip" -RDEPEND="" - -src_compile() { - unset CFLAGS - emake \ - CC="$(tc-getCC)" \ - CPP="$(tc-getCXX)" \ - CXX="$(tc-getCXX)" \ - EXTRA_FLAGS="${LDFLAGS}" \ - RELEASE_FLAGS="${CXXFLAGS}" -} - -src_install() { - dobin bowtie bowtie-* - exeinto /usr/share/${PN}/scripts - doexe scripts/* - - insinto /usr/share/${PN} - doins -r genomes indexes - - newman MANUAL bowtie.1 - dodoc AUTHORS NEWS TUTORIAL doc/README - dohtml doc/{manual.html,style.css} -} |