proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

1 files changed, 57 insertions, 0 deletions

diff --git a/sci-biology/qrna/qrna-2.0.3c-r1.ebuild b/sci-biology/qrna/qrna-2.0.3c-r1.ebuild
new file mode 100644
index 000000000000..f8834630acee
--- /dev/null
+++ b/sci-biology/qrna/qrna-2.0.3c-r1.ebuild
@@ -0,0 +1,57 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=4
+
+inherit eutils toolchain-funcs
+
+DESCRIPTION="Prototype ncRNA genefinder"
+HOMEPAGE="http://selab.janelia.org/software.html"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="amd64 ~ppc x86"
+IUSE=""
+
+RDEPEND="
+	dev-lang/perl
+	sci-biology/hmmer"
+DEPEND="${RDEPEND}"
+
+src_prepare() {
+	epatch \
+		"${FILESDIR}"/${P}-glibc-2.10.patch \
+		"${FILESDIR}"/${P}-ldflags.patch
+	sed \
+		-e "s:^CC.*:CC = $(tc-getCC):" \
+		-e "/^AR/s:ar:$(tc-getAR):g" \
+		-e "/^RANLIB/s:ranlib:$(tc-getRANLIB):g" \
+		-e "/CFLAGS/s:=.*$:= ${CFLAGS}:" \
+		-i {src,squid,squid02}/Makefile || die
+	rm -v squid*/*.a
+}
+
+src_compile() {
+	local dir
+	for dir in squid squid02 src; do
+		emake -C ${dir}
+	done
+}
+
+src_install () {
+	dobin src/{cfgbuild,eqrna,eqrna_sample,rnamat_main} scripts/*
+
+	newdoc 00README README
+	insinto /usr/share/doc/${PF}
+	doins documentation/*
+
+	insinto /usr/share/${PN}/data
+	doins lib/*
+	insinto /usr/share/${PN}/demos
+	doins Demos/*
+
+	# Sets the path to the QRNA data files.
+	doenvd "${FILESDIR}"/26qrna
+}