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authorDavid Seifert <soap@gentoo.org>2022-06-19 10:08:45 +0200
committerDavid Seifert <soap@gentoo.org>2022-06-19 10:08:45 +0200
commitd4b7f179a733bc6f4bc223a20f9f40825d920aa2 (patch)
treef5a72b7709f2135a87702e50b4114a03635b6490 /sci-biology/samtools
parentsci-biology/bcftools: drop 1.13, 1.15 (diff)
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sci-biology/samtools: drop 1.13, 1.15
Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'sci-biology/samtools')
-rw-r--r--sci-biology/samtools/Manifest2
-rw-r--r--sci-biology/samtools/samtools-1.13.ebuild47
-rw-r--r--sci-biology/samtools/samtools-1.15.ebuild47
3 files changed, 0 insertions, 96 deletions
diff --git a/sci-biology/samtools/Manifest b/sci-biology/samtools/Manifest
index a605c469e6ea..0ff07e0d4f83 100644
--- a/sci-biology/samtools/Manifest
+++ b/sci-biology/samtools/Manifest
@@ -1,4 +1,2 @@
DIST samtools-0.1.20.tar.gz 566387 BLAKE2B a62d74c408877754af50f5e5fea0e2289ec1e0c9f25013ed0d039bfe8ef61108600d917f8c9d356e98aca632795b4eb0f01ea1b54526a652577fb74a38a433c2 SHA512 15bd8cf401d14c1ab4faa591b6054f5ea9731c4e966f37f71d33d9081a270cfeb91e8a3d80c631e0725b49da81387f824c206e8c21553ad554d0cfc5c238a6e5
-DIST samtools-1.13.tar.bz2 7984998 BLAKE2B e46161c43d4ea51c3ef1d9ed74c40c21b70aef80aa903a49b94b3d468f9211e9147281204eb61b9843c071f09ead08c924e3d624d4df76a1d02ba9ceb318399a SHA512 647fbad2935dfc3e4f85da257a6ee59af40078024a3b77f117dada5f55846e381a096db3cf62a63c04ae95dfc9fadb1d515b8d618e6388bc93f0b2ac85eaf6ea
DIST samtools-1.15.1.tar.bz2 7831692 BLAKE2B 0fe94ff05075b219c77d0da8500c64bdffd53927950b5a67f8708c5c326ebc90a40c193b3bcf0baf3d09baed6fa596d9d024cb529340c6887de88614c9ff4bd6 SHA512 54a8a394b6b5231bd942236ec353027caaf48b4552a00b35573a1e71d680320d8140a73409bb76066c82e86fe62cf74f2f8f2f1a1e4aec96e4e8b9aff0d44a46
-DIST samtools-1.15.tar.bz2 7832423 BLAKE2B 5bdfaec750faaa8d84eb601e75f513d726724d3f2f882d9e16edfe4802bd1ad8fee5f1208c93f450fff37125998cb50ff2247fce514d94e580d5d292555da930 SHA512 21ce4aff90514a393e685cbb6fa7833c88010b18846be0190d49e8da70995252c2e17b5108113d2313a752706618041c74680efc9ed5539b97ebc0589cb6c6e7
diff --git a/sci-biology/samtools/samtools-1.13.ebuild b/sci-biology/samtools/samtools-1.13.ebuild
deleted file mode 100644
index 3165c7b7381c..000000000000
--- a/sci-biology/samtools/samtools-1.13.ebuild
+++ /dev/null
@@ -1,47 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-inherit toolchain-funcs
-
-DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats"
-HOMEPAGE="http://www.htslib.org/"
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos"
-
-RDEPEND="
- dev-lang/perl
- =sci-libs/htslib-${PV}*:=
- sys-libs/ncurses:=[unicode(+)]
- sys-libs/zlib"
-DEPEND="${RDEPEND}"
-BDEPEND="virtual/pkgconfig"
-
-src_prepare() {
- default
-
- # remove bundled htslib
- rm -r htslib-* || die
-}
-
-src_configure() {
- econf \
- --with-ncurses \
- --with-htslib=system \
- CURSES_LIB="$($(tc-getPKG_CONFIG) --libs ncursesw || die)"
-}
-
-src_compile() {
- emake AR="$(tc-getAR)"
-}
-
-src_install() {
- default
-
- dodoc -r examples
- docompress -x /usr/share/doc/${PF}/examples
-}
diff --git a/sci-biology/samtools/samtools-1.15.ebuild b/sci-biology/samtools/samtools-1.15.ebuild
deleted file mode 100644
index 74aee5acaaa2..000000000000
--- a/sci-biology/samtools/samtools-1.15.ebuild
+++ /dev/null
@@ -1,47 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-inherit toolchain-funcs
-
-DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats"
-HOMEPAGE="http://www.htslib.org/"
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos"
-
-RDEPEND="
- dev-lang/perl
- =sci-libs/htslib-${PV}*:=
- sys-libs/ncurses:=[unicode(+)]
- sys-libs/zlib"
-DEPEND="${RDEPEND}"
-BDEPEND="virtual/pkgconfig"
-
-src_prepare() {
- default
-
- # remove bundled htslib
- rm -r htslib-* || die
-}
-
-src_configure() {
- econf \
- --with-ncurses \
- --with-htslib=system \
- CURSES_LIB="$($(tc-getPKG_CONFIG) --libs ncursesw || die)"
-}
-
-src_compile() {
- emake AR="$(tc-getAR)"
-}
-
-src_install() {
- default
-
- dodoc -r examples
- docompress -x /usr/share/doc/${PF}/examples
-}