Drop "CCP4: Software for Macromolecular Crystallography"

obsoletes:
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=160190
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=324059
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=332485
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=367771
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=367773
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=383227
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=448756
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=460502
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=460504
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=466936
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=467040
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=467048
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=476580
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478580
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478586
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478588
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478594
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478604
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=521646
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=528512
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=530878
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=540760
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=555614
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=556498
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=557038
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=561196
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=562780

Signed-off-by: Justin Lecher <jlec@gentoo.org>

15 files changed, 0 insertions, 418 deletions

diff --git a/sci-chemistry/ccp4/files/6.0.1-dont-make-dirs-in-configure.patch b/sci-chemistry/ccp4/files/6.0.1-dont-make-dirs-in-configure.patch
deleted file mode 100644
index 1420419ffab0..000000000000
--- a/sci-chemistry/ccp4/files/6.0.1-dont-make-dirs-in-configure.patch
+++ /dev/null
@@ -1,87 +0,0 @@
---- ccp4-6.0.1.orig/configure	2006-06-10 17:30:02.000000000 -0700
-+++ ccp4-6.0.1/configure	2006-06-10 17:45:43.000000000 -0700
-@@ -623,45 +623,45 @@
- #     echo "! Beware -- the $system installation isn't properly tested." ; }
- syswarn='echo; echo "! Beware -- the $system installation is not properly tested."'
- 
--if test -z "$onlylibs" ; then 
--   for i in CCP4_SCR BINSORT_SCR; do
--     if ( eval test -d \$$i || eval mkdir -p \$$i ) ; then :
--     else
--       eval echo "! No directory \$$i and can\'t create it."
--       echo "  Check the value of $i."
--       badvar=1
--     fi
--   done
--
--   for i in libdir bindir; do
--     if ( eval test -d \$$i || eval mkdir -p \$$i ) ; then :
--     else
--       eval echo "! No directory \$$i and can\'t create it."
--       echo "  Check the argument of --$i."
--       badvar=1
--     fi
--   done
--
--   for i in $dotsrc $dotunsupp $dotunsuppsrc ./lib ./lib/src ./lib/data ./ccp4i/etc/unix $mosflmdir/lib $mosflmdir/bin $mosflmdir/cbf/lib ; do
--     if test -d $i || mkdir $i; then :
--     else
--       eval echo "! No directory $i and can\'t create it."
--       badvar=1
--     fi
--   done
--else
--   # Kludge to fool the "Makefile" target in the top-level CCP4
--   # Makefile into not trying to remake src/Makefile.in
--   for i in $srcdir/src $srcdir/lib/src ; do
--     if test -d $i || mkdir $i; then
--       if ! test -f $i/Makefile.in ; then
--         echo
--         echo "onlylibs: making dummy file $i/Makefile.in"
--	 touch $i/Makefile.in
--       fi
--     fi
--   done
--fi
-+#if test -z "$onlylibs" ; then 
-+#   for i in CCP4_SCR BINSORT_SCR; do
-+#     if ( eval test -d \$$i || eval mkdir -p \$$i ) ; then :
-+#     else
-+#       eval echo "! No directory \$$i and can\'t create it."
-+#       echo "  Check the value of $i."
-+#       badvar=1
-+#     fi
-+#   done
-+#
-+#   for i in libdir bindir; do
-+#     if ( eval test -d \$$i || eval mkdir -p \$$i ) ; then :
-+#     else
-+#       eval echo "! No directory \$$i and can\'t create it."
-+#       echo "  Check the argument of --$i."
-+#       badvar=1
-+#     fi
-+#   done
-+#
-+#   for i in $dotsrc $dotunsupp $dotunsuppsrc ./lib ./lib/src ./lib/data ./ccp4i/etc/unix $mosflmdir/lib $mosflmdir/bin $mosflmdir/cbf/lib ; do
-+#     if test -d $i || mkdir $i; then :
-+#     else
-+#       eval echo "! No directory $i and can\'t create it."
-+#       badvar=1
-+#     fi
-+#   done
-+#else
-+#   # Kludge to fool the "Makefile" target in the top-level CCP4
-+#   # Makefile into not trying to remake src/Makefile.in
-+#   for i in $srcdir/src $srcdir/lib/src ; do
-+#     if test -d $i || mkdir $i; then
-+#       if ! test -f $i/Makefile.in ; then
-+#         echo
-+#         echo "onlylibs: making dummy file $i/Makefile.in"
-+#	 touch $i/Makefile.in
-+#       fi
-+#     fi
-+#   done
-+#fi
- 
- ### sanity checks
- 
diff --git a/sci-chemistry/ccp4/files/6.0.1-ppc-double-define-gerror.patch b/sci-chemistry/ccp4/files/6.0.1-ppc-double-define-gerror.patch
deleted file mode 100644
index a77d9494a05c..000000000000
--- a/sci-chemistry/ccp4/files/6.0.1-ppc-double-define-gerror.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- ccp4-6.0.1.orig/lib/src/library_f.c	2006-06-12 07:06:22.000000000 -0700
-+++ ccp4-6.0.1/lib/src/library_f.c	2006-06-12 07:21:56.000000000 -0700
-@@ -716,7 +716,7 @@
- 
- #endif /* end of apple xlf support */
- 
--#if ( defined (__linux__) && defined (_CALL_SYSV) )
-+#if ( defined (__linux__) && defined (_CALL_SYSV) && ! defined(G95) && ! defined (GFORTRAN) )
- /* linuxppc xlf support */
- void gerror_ (str, Lstr)
- char *str;
diff --git a/sci-chemistry/ccp4/files/6.0.2-dont-make-dirs-in-configure.patch b/sci-chemistry/ccp4/files/6.0.2-dont-make-dirs-in-configure.patch
deleted file mode 100644
index 1420419ffab0..000000000000
--- a/sci-chemistry/ccp4/files/6.0.2-dont-make-dirs-in-configure.patch
+++ /dev/null
@@ -1,87 +0,0 @@
---- ccp4-6.0.1.orig/configure	2006-06-10 17:30:02.000000000 -0700
-+++ ccp4-6.0.1/configure	2006-06-10 17:45:43.000000000 -0700
-@@ -623,45 +623,45 @@
- #     echo "! Beware -- the $system installation isn't properly tested." ; }
- syswarn='echo; echo "! Beware -- the $system installation is not properly tested."'
- 
--if test -z "$onlylibs" ; then 
--   for i in CCP4_SCR BINSORT_SCR; do
--     if ( eval test -d \$$i || eval mkdir -p \$$i ) ; then :
--     else
--       eval echo "! No directory \$$i and can\'t create it."
--       echo "  Check the value of $i."
--       badvar=1
--     fi
--   done
--
--   for i in libdir bindir; do
--     if ( eval test -d \$$i || eval mkdir -p \$$i ) ; then :
--     else
--       eval echo "! No directory \$$i and can\'t create it."
--       echo "  Check the argument of --$i."
--       badvar=1
--     fi
--   done
--
--   for i in $dotsrc $dotunsupp $dotunsuppsrc ./lib ./lib/src ./lib/data ./ccp4i/etc/unix $mosflmdir/lib $mosflmdir/bin $mosflmdir/cbf/lib ; do
--     if test -d $i || mkdir $i; then :
--     else
--       eval echo "! No directory $i and can\'t create it."
--       badvar=1
--     fi
--   done
--else
--   # Kludge to fool the "Makefile" target in the top-level CCP4
--   # Makefile into not trying to remake src/Makefile.in
--   for i in $srcdir/src $srcdir/lib/src ; do
--     if test -d $i || mkdir $i; then
--       if ! test -f $i/Makefile.in ; then
--         echo
--         echo "onlylibs: making dummy file $i/Makefile.in"
--	 touch $i/Makefile.in
--       fi
--     fi
--   done
--fi
-+#if test -z "$onlylibs" ; then 
-+#   for i in CCP4_SCR BINSORT_SCR; do
-+#     if ( eval test -d \$$i || eval mkdir -p \$$i ) ; then :
-+#     else
-+#       eval echo "! No directory \$$i and can\'t create it."
-+#       echo "  Check the value of $i."
-+#       badvar=1
-+#     fi
-+#   done
-+#
-+#   for i in libdir bindir; do
-+#     if ( eval test -d \$$i || eval mkdir -p \$$i ) ; then :
-+#     else
-+#       eval echo "! No directory \$$i and can\'t create it."
-+#       echo "  Check the argument of --$i."
-+#       badvar=1
-+#     fi
-+#   done
-+#
-+#   for i in $dotsrc $dotunsupp $dotunsuppsrc ./lib ./lib/src ./lib/data ./ccp4i/etc/unix $mosflmdir/lib $mosflmdir/bin $mosflmdir/cbf/lib ; do
-+#     if test -d $i || mkdir $i; then :
-+#     else
-+#       eval echo "! No directory $i and can\'t create it."
-+#       badvar=1
-+#     fi
-+#   done
-+#else
-+#   # Kludge to fool the "Makefile" target in the top-level CCP4
-+#   # Makefile into not trying to remake src/Makefile.in
-+#   for i in $srcdir/src $srcdir/lib/src ; do
-+#     if test -d $i || mkdir $i; then
-+#       if ! test -f $i/Makefile.in ; then
-+#         echo
-+#         echo "onlylibs: making dummy file $i/Makefile.in"
-+#	 touch $i/Makefile.in
-+#       fi
-+#     fi
-+#   done
-+#fi
- 
- ### sanity checks
- 
diff --git a/sci-chemistry/ccp4/files/6.0.2-gcc-4.1.2-idate-fix.patch b/sci-chemistry/ccp4/files/6.0.2-gcc-4.1.2-idate-fix.patch
deleted file mode 100644
index c118cc53baff..000000000000
--- a/sci-chemistry/ccp4/files/6.0.2-gcc-4.1.2-idate-fix.patch
+++ /dev/null
@@ -1,14 +0,0 @@
-https://bugs.gentoo.org/show_bug.cgi?id=175630
-JTRiley
-
---- ccp4-6.0.2.orig/src/refmac5_/make_unix_ccp4.f	2005-09-06 07:29:56.000000000 -0400
-+++ ccp4-6.0.2.new/src/refmac5_/make_unix_ccp4.f	2007-05-02 20:03:46.000000000 -0400
-@@ -97,7 +97,7 @@
- 
-       READ(CID,'(I2,1X,I2,1X,I2,2X)') IH(4),IH(3),IH(2)
- 
--      CALL IDATE(IMON,IDAY,IYR)
-+      CALL UIDATE(IMON,IDAY,IYR)
-       IF(IYR.GE.99) THEN
-         IYR=IYR+1900
-       ELSE
diff --git a/sci-chemistry/ccp4/files/6.0.2-ppc-double-define-gerror.patch b/sci-chemistry/ccp4/files/6.0.2-ppc-double-define-gerror.patch
deleted file mode 100644
index a77d9494a05c..000000000000
--- a/sci-chemistry/ccp4/files/6.0.2-ppc-double-define-gerror.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- ccp4-6.0.1.orig/lib/src/library_f.c	2006-06-12 07:06:22.000000000 -0700
-+++ ccp4-6.0.1/lib/src/library_f.c	2006-06-12 07:21:56.000000000 -0700
-@@ -716,7 +716,7 @@
- 
- #endif /* end of apple xlf support */
- 
--#if ( defined (__linux__) && defined (_CALL_SYSV) )
-+#if ( defined (__linux__) && defined (_CALL_SYSV) && ! defined(G95) && ! defined (GFORTRAN) )
- /* linuxppc xlf support */
- void gerror_ (str, Lstr)
- char *str;
diff --git a/sci-chemistry/ccp4/files/ccp4i-default-to-firefox.patch b/sci-chemistry/ccp4/files/ccp4i-default-to-firefox.patch
deleted file mode 100644
index 106db895b775..000000000000
--- a/sci-chemistry/ccp4/files/ccp4i-default-to-firefox.patch
+++ /dev/null
@@ -1,13 +0,0 @@
---- ccp4-5.99.5.orig/ccp4i/etc/configure.def.dist	2006-01-06 17:54:17.000000000 -0800
-+++ ccp4-5.99.5/ccp4i/etc/configure.def.dist	2006-01-06 17:54:47.000000000 -0800
-@@ -54,8 +54,8 @@
- MESSAGE                   _text				""
- BLT_LIBRARY               _text                     ""
- MENU_LENGTH               _positiveint              25
--HYPERTEXT_VIEWER          _text                     netscape
--START_NETSCAPE	          _text			    netscape
-+HYPERTEXT_VIEWER          _text                     firefox
-+START_NETSCAPE	          _text			    firefox
- O_MAPMAN                  _text                     mapman
- MAPMAN_MAXSIZE		  _positiveint		    4194304
- QUANTA_MBKALL             _text                     mbkall
diff --git a/sci-chemistry/ccp4/files/check-blas-lapack-pthread.patch b/sci-chemistry/ccp4/files/check-blas-lapack-pthread.patch
deleted file mode 100644
index 02a2aa6d8877..000000000000
--- a/sci-chemistry/ccp4/files/check-blas-lapack-pthread.patch
+++ /dev/null
@@ -1,103 +0,0 @@
---- ccp4-5.99.5.orig/configure	2006-01-17 00:35:36.000000000 -0800
-+++ ccp4-5.99.5/configure	2006-01-17 10:44:39.000000000 -0800
-@@ -2410,12 +2410,12 @@
-       end
- EOF
-           #firslty test without -lblas
--          test_compile="$FC $FOPTIM $XFFLAGS -o testlink testlink.f -llapack"
-+          test_compile="$FC $FOPTIM $XFFLAGS -o testlink testlink.f -llapack -lpthread"
-           echo $test_compile
-           if { (eval $test_compile >& /dev/null ) 2>&1; } && test -s testlink ; then
-             # Compilation was okay
--            echo "... only -llapack needed"
--            XLAPACK_LIB="-llapack"
-+            echo "... only -llapack -lpthread needed"
-+            XLAPACK_LIB="-llapack -lpthread"
-             # Set the next two variables so that configure
-             # doesn't try to build netlib libraries
-             LAPACKLIB="lapack"
-@@ -2424,12 +2424,12 @@
-             tryblas=
-           else
- 	    echo "more than just -llapack needed...."
--            test_compile="$FC $FOPTIM $XFFLAGS -o testlink testlink.f -llapack -lblas"
-+            test_compile="$FC $FOPTIM $XFFLAGS -o testlink testlink.f -llapack -lblas -lpthread"
-             echo $test_compile
-             if { (eval $test_compile ) 2>&1; } && test -s testlink ; then
-               # Compilation was okay
--              echo "...-llapack and -lblas were needed"
--              XLAPACK_LIB="-llapack -lblas"
-+              echo "...-llapack, -lpthread and -lblas were needed"
-+              XLAPACK_LIB="-llapack -lpthread -lblas"
-               # Set the next two variables so that configure
-               # doesn't try to build netlib libraries
-               LAPACKLIB="lapack blas"
-@@ -2720,8 +2720,8 @@
-       STOP
-       END
- EOF
--                test_compile="$FC $FOPTIM $XFFLAGS -o testlink testlink.f -L$testdir -l$testlib"
--                test_ccompile="$FC $FOPTIM $XFFLAGS -o testlink testlink.f -L$testdir -l$testlib $XLDFLAGS"
-+                test_compile="$FC $FOPTIM $XFFLAGS -o testlink testlink.f -L$testdir -l$testlib -lpthread"
-+                test_ccompile="$FC $FOPTIM $XFFLAGS -o testlink testlink.f -L$testdir -l$testlib $XLDFLAGS -lpthread"
-                 echo $test_compile
-                 if { (eval $test_compile ) 2>&1; } && test -s testlink ; then
-                   have_lapack=yes
-@@ -2738,7 +2738,7 @@
-                   LAPACKDIR="$testdir"
-                   echo "Link ok - using lib$LAPACKLIB from $LAPACKDIR"
- 		  #
--		  XLAPACK_LIB="-L$LAPACKDIR -l$LAPACKLIB"
-+		  XLAPACK_LIB="-L$LAPACKDIR -l$LAPACKLIB -lpthread"
-                   #
-                   # Test to see if we need BLAS too
-                   # Do this by trying to compile a test program
-@@ -2750,8 +2750,8 @@
-                   if test -f testlsame ; then
-                     rm -f testsame testlsame.o
-                   fi
--                  test_compile="$FC $FOPTIM $XFFLAGS -o testlsame lsametst.f -L$LAPACKDIR -l$LAPACKLIB"
--                  test_ccompile="$FC $FOPTIM $XFFLAGS -o testlsame lsametst.f -L$LAPACKDIR -l$LAPACKLIB $XLDFLAGS"
-+                  test_compile="$FC $FOPTIM $XFFLAGS -o testlsame lsametst.f -L$LAPACKDIR -l$LAPACKLIB -lpthread"
-+                  test_ccompile="$FC $FOPTIM $XFFLAGS -o testlsame lsametst.f -L$LAPACKDIR -l$LAPACKLIB $XLDFLAGS -lpthread"
-                   echo $test_compile
-                   if { ( eval $test_compile) 2>&1;} && test -s testlsame ; then
-                     have_blas=yes
-@@ -2830,8 +2830,8 @@
-       STOP
-       END
- EOF
--                  test_compile="$FC $FOPTIM $XFFLAGS -o testlink testlink.f -L$testdir -l$testlib"
--                  test_ccompile="$FC $FOPTIM $XFFLAGS -o testlink testlink.f -L$testdir -l$testlib $XLDFLAGS"
-+                  test_compile="$FC $FOPTIM $XFFLAGS -o testlink testlink.f -L$testdir -l$testlib -lpthread"
-+                  test_ccompile="$FC $FOPTIM $XFFLAGS -o testlink testlink.f -L$testdir -l$testlib $XLDFLAGS -lpthread"
-                   echo $test_compile
-                   if { ( eval $test_compile) 2>&1;} && test -s testlink ; then
-                     have_blas=yes
-@@ -3033,7 +3033,7 @@
-         if test -f testlsame ; then
-           rm -f testsame testlsame.o
-         fi
--        test_compile="$FC $FOPTIM $XFFLAGS -o testlsame lsametst.f -L$BLASDIR -l$BLASLIB"
-+        test_compile="$FC $FOPTIM $XFFLAGS -o testlsame lsametst.f -L$BLASDIR -l$BLASLIB -lpthread"
-         echo $test_compile
-         if { ( eval $test_compile) 2>&1;} && test -s testlsame ; then
-           echo "Found LSAME in lib$BLASLIB"
-@@ -3046,7 +3046,7 @@
-         if test -f testxerbla ; then
-           rm -f testxerbla testxerbla.o
-         fi
--        test_compile="$FC $FOPTIM $XFFLAGS -o testxerbla xerblatst.f -L$BLASDIR -l$BLASLIB"
-+        test_compile="$FC $FOPTIM $XFFLAGS -o testxerbla xerblatst.f -L$BLASDIR -l$BLASLIB -lpthread"
-         echo $test_compile
-         if { ( eval $test_compile) 2>&1;} && test -s testxerbla ; then
-           # Found lsame
-@@ -3080,7 +3080,7 @@
-     cd ../..
-     #
-     lapackdir=lib/lapack
--    XLAPACK_LIB="-L$srcdir/lib/lapack -llapack -L$BLASDIR -l$BLASLIB"
-+    XLAPACK_LIB="-L$srcdir/lib/lapack -llapack -L$BLASDIR -l$BLASLIB -lpthread"
- # netlib lapack is in fortran, so we may need the fortran libraries when
- # we are linking using the C or C++ compilers
-     case $system in 
diff --git a/sci-chemistry/ccp4/files/clipper-find-mccp4-includes.patch b/sci-chemistry/ccp4/files/clipper-find-mccp4-includes.patch
deleted file mode 100644
index 3bf5a0652247..000000000000
--- a/sci-chemistry/ccp4/files/clipper-find-mccp4-includes.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- ccp4-5.99.5/lib/clipper/configure.orig	2006-01-07 16:54:13.000000000 -0800
-+++ ccp4-5.99.5/lib/clipper/configure	2006-01-07 16:54:31.000000000 -0800
-@@ -21751,7 +21751,7 @@
- 
- if test "x$mccp4_prefix" != x; then
-  # ie. mccp4=thing was given (thing is what we're checking for)
-- ac_MCCP4_CXXFLAGS="-I$mccp4_prefix/include"
-+ ac_MCCP4_CXXFLAGS="-I$mccp4_prefix/include -I$mccp4_prefix/include/mccp4"
-  ac_MCCP4_LDOPTS="-L$mccp4_prefix/lib -lmccp4"
- else
-  # treat as standard lib/include
diff --git a/sci-chemistry/ccp4/files/create-mosflm-bindir.patch b/sci-chemistry/ccp4/files/create-mosflm-bindir.patch
deleted file mode 100644
index 34d6197572fc..000000000000
--- a/sci-chemistry/ccp4/files/create-mosflm-bindir.patch
+++ /dev/null
@@ -1,10 +0,0 @@
---- ccp4-5.99.5.orig/x-windows/Makefile.in	2006-01-06 12:31:02.000000000 -0800
-+++ ccp4-5.99.5/x-windows/Makefile.in	2006-01-06 12:31:30.000000000 -0800
-@@ -158,6 +158,7 @@
- install_obj = ipdisp.exe hklview xdldataman xdlmapman \
- rotgen ipmosflm
- install: all
-+	mkdir -p $(bindir)
- 	$(INSTALL_PROGRAM) $(srcdir)/ipdisp.exe $(bindir)
- 	$(INSTALL_PROGRAM) $(srcdir)/ipdisp/ipdisp $(bindir)
- 	$(INSTALL_PROGRAM) $(srcdir)/hklview $(bindir)
diff --git a/sci-chemistry/ccp4/files/dont-build-rasmol.patch b/sci-chemistry/ccp4/files/dont-build-rasmol.patch
deleted file mode 100644
index 8da54fd26de8..000000000000
--- a/sci-chemistry/ccp4/files/dont-build-rasmol.patch
+++ /dev/null
@@ -1,19 +0,0 @@
---- ccp4-5.99.5.orig/x-windows/Makefile.in	2005-12-05 03:06:57.000000000 -0800
-+++ ccp4-5.99.5/x-windows/Makefile.in	2005-12-05 03:07:23.000000000 -0800
-@@ -35,7 +35,7 @@
- #
- # all
- #
--all : xdlview libjwc_c libjwc_f rotgen_ hklview ipdisp.exe xdlgjk xjiffy rasmol2 ipmosflm
-+all : xdlview libjwc_c libjwc_f rotgen_ hklview ipdisp.exe xdlgjk xjiffy ipmosflm
- #
- # xdl_view
- #
-@@ -161,7 +161,6 @@
- 	$(INSTALL_PROGRAM) $(srcdir)/xdldataman $(bindir)
- 	$(INSTALL_PROGRAM) $(srcdir)/xdlmapman $(bindir)
- 	cd $(srcdir)/XCCPJIFFY ; $(MAKE) install
--	$(INSTALL_PROGRAM) $(rasmol_dir)/rasmol $(bindir)
- 	cd $(rotgen_dir); $(MAKE) install
- 	$(INSTALL_PROGRAM) $(mosflm_dir)/bin/ipmosflm $(bindir)
- 	cd $(xdlview_dir); $(MAKE) install
diff --git a/sci-chemistry/ccp4/files/make-ipmosflm-dir.patch b/sci-chemistry/ccp4/files/make-ipmosflm-dir.patch
deleted file mode 100644
index 7813141b2ec2..000000000000
--- a/sci-chemistry/ccp4/files/make-ipmosflm-dir.patch
+++ /dev/null
@@ -1,10 +0,0 @@
---- ccp4-5.99.5.orig/x-windows/Mosflm/mosflm/Makefile.in	2006-01-06 00:04:12.000000000 -0800
-+++ ccp4-5.99.5/x-windows/Mosflm/mosflm/Makefile.in	2006-01-06 00:04:41.000000000 -0800
-@@ -37,6 +37,7 @@
- 	${F77} ${FFLAGS} -o $@ $<
- 
- ipmosflm:	${OBJS}
-+		mkdir -p ${DPSBIN}
- 		${FLINK} ${FFLAGS} ${OBJS} ${LOCALLIBS} ${LIBS} \
-                 -o ${DPSBIN}/ipmosflm ${LDFLAGS}
- 
diff --git a/sci-chemistry/ccp4/files/make-mosflm-cbf-libdir.patch b/sci-chemistry/ccp4/files/make-mosflm-cbf-libdir.patch
deleted file mode 100644
index ae4b7633b105..000000000000
--- a/sci-chemistry/ccp4/files/make-mosflm-cbf-libdir.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- ccp4-5.99.5.orig/x-windows/Mosflm/cbf/Makefile.in	2006-01-05 23:42:19.000000000 -0800
-+++ ccp4-5.99.5/x-windows/Mosflm/cbf/Makefile.in	2006-01-05 23:43:35.000000000 -0800
-@@ -132,7 +132,7 @@
- #
- # CBF library
- #
--$(LIB)/libcbf.a: $(SOURCE) $(HEADERS) $(COMMONDEP)
-+$(LIB)/libcbf.a: $(SOURCE) $(HEADERS) $(COMMONDEP) $(LIB)
- 	$(CC) $(CFLAGS) $(INCLUDES) $(WARNINGS) -c $(SOURCE)
- 	$(AR) cr $@ *.o
- 	$(RANLIB) $@
diff --git a/sci-chemistry/ccp4/files/make-mosflm-index-libdir.patch b/sci-chemistry/ccp4/files/make-mosflm-index-libdir.patch
deleted file mode 100644
index 97607b689672..000000000000
--- a/sci-chemistry/ccp4/files/make-mosflm-index-libdir.patch
+++ /dev/null
@@ -1,10 +0,0 @@
---- ccp4-5.99.5.orig/x-windows/Mosflm/index/Makefile.in	2006-01-05 23:15:09.000000000 -0800
-+++ ccp4-5.99.5/x-windows/Mosflm/index/Makefile.in	2006-01-05 23:15:30.000000000 -0800
-@@ -76,6 +76,7 @@
- 
- # local version of libdps_index.a
- ${LIB}/dps_index.a: ${IOBJS} ${HOBJS}
-+	mkdir -p ${LIB}
- 	ar ru ${LIB}/dps_index.a ${IOBJS} ${HOBJS}
- 
- ${LIB}/libpeak.a: 
diff --git a/sci-chemistry/ccp4/files/make-mosflm-libdir.patch b/sci-chemistry/ccp4/files/make-mosflm-libdir.patch
deleted file mode 100644
index eac1b9f1721e..000000000000
--- a/sci-chemistry/ccp4/files/make-mosflm-libdir.patch
+++ /dev/null
@@ -1,10 +0,0 @@
---- ccp4-5.99.5.orig/x-windows/Mosflm/src/dps/index/Makefile.in	2006-01-05 22:48:47.000000000 -0800
-+++ ccp4-5.99.5/x-windows/Mosflm/src/dps/index/Makefile.in	2006-01-05 22:49:02.000000000 -0800
-@@ -42,6 +42,7 @@
- 	$(LOCALLIBS) $(LIBS) 
- 
- index: $(IOBJS) 
-+	mkdir -p $(LIBDIR)
- 	${AR} $(AR_FLAGS) $(LIBDIR)/libdps_index.a $(IOBJS)
- 	chmod 644 $(LIBDIR)/libdps_index.a
- 
diff --git a/sci-chemistry/ccp4/files/pass-clipper-enablevals.patch b/sci-chemistry/ccp4/files/pass-clipper-enablevals.patch
deleted file mode 100644
index 3e1a8b0e6be8..000000000000
--- a/sci-chemistry/ccp4/files/pass-clipper-enablevals.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- ccp4-5.99.5.orig/configure	2006-01-06 11:45:43.000000000 -0800
-+++ ccp4-5.99.5/configure	2006-01-06 11:46:53.000000000 -0800
-@@ -3210,7 +3210,7 @@
- #ccp4 setup
-   xopts="${xopts} --with-ccp4=${srcdir}"
- #interface setup
--  xopts="${xopts} --enable-mmdb --enable-cif --enable-ccp4 --enable-minimol"
-+  xopts="${xopts} --enable-mmdb --enable-cif --enable-ccp4 --enable-minimol --enable-mmdbold --enable-mtz --with-mccp4=/usr"
-   echo   
-   echo "********* CLIPPER CONFIGURATION ***********"
-   echo