diff options
author | Robin H. Johnson <robbat2@gentoo.org> | 2015-08-08 13:49:04 -0700 |
---|---|---|
committer | Robin H. Johnson <robbat2@gentoo.org> | 2015-08-08 17:38:18 -0700 |
commit | 56bd759df1d0c750a065b8c845e93d5dfa6b549d (patch) | |
tree | 3f91093cdb475e565ae857f1c5a7fd339e2d781e /sci-chemistry/parassign/parassign-20130522.ebuild | |
download | gentoo-56bd759df1d0c750a065b8c845e93d5dfa6b549d.tar.gz gentoo-56bd759df1d0c750a065b8c845e93d5dfa6b549d.tar.bz2 gentoo-56bd759df1d0c750a065b8c845e93d5dfa6b549d.zip |
proj/gentoo: Initial commit
This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.
This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.
Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed
Diffstat (limited to 'sci-chemistry/parassign/parassign-20130522.ebuild')
-rw-r--r-- | sci-chemistry/parassign/parassign-20130522.ebuild | 65 |
1 files changed, 65 insertions, 0 deletions
diff --git a/sci-chemistry/parassign/parassign-20130522.ebuild b/sci-chemistry/parassign/parassign-20130522.ebuild new file mode 100644 index 000000000000..8ecbd0060d10 --- /dev/null +++ b/sci-chemistry/parassign/parassign-20130522.ebuild @@ -0,0 +1,65 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +PYTHON_COMPAT=( python2_7 ) + +inherit distutils-r1 python-r1 + +DESCRIPTION="Assign protein nuclei solely on the basis of pseudocontact shifts (PCS)" +HOMEPAGE="http://protchem.lic.leidenuniv.nl/software/parassign/registration" +SRC_URI="PARAssign_Linux_x64_86.tgz" +RESTRICT="fetch" + +SLOT="0" +LICENSE="Apache-2.0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +REQUIRED_USE="${PYTHON_REQUIRED_USE}" + +RDEPEND="${PYTHON_DEPS}" +DEPEND="${RDEPEND} + dev-python/cython[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/scientificpython[${PYTHON_USEDEP}] + sci-biology/biopython[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}]" + +S="${WORKDIR}"/PARAssign_Linux_x64_86/ + +src_prepare() { + sed \ + -e '1i#!/usr/bin/python2' \ + -i code/*py || die + + if use x86; then + sed \ + -e "s:munkres64:munkres:g" \ + -i modules/setup.py || die + elif use amd64; then + sed \ + -e "s:munkres:munkres64:g" \ + -i code/*py || die + fi + cd modules || die + rm *o *c || die + distutils-r1_src_prepare +} + +src_compile() { + cd modules || die + distutils-r1_src_compile +} + +src_install() { + python_parallel_foreach_impl python_doscript code/* || die + + dodoc PARAssign_Tutorial.pdf README + + cd modules || die + distutils-r1_src_install +} |