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| author |   Justin Lecher <jlec@gentoo.org> | 2015-10-26 08:29:56 +0100 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2015-10-26 08:32:25 +0100 |
| commit | 7d62034735e700ca67e977470d79f5571b15b221 (patch) | |
| tree | 78d45bafd1284caf0c06b4b98131677301303cbb /sci-chemistry/xia2/files/0.3.1.6-fix-syntax.patch | |
| parent | add co-maintainer Coacher to metadata (diff) | |
| download | gentoo-7d62034735e700ca67e977470d79f5571b15b221.tar.gz gentoo-7d62034735e700ca67e977470d79f5571b15b221.tar.bz2 gentoo-7d62034735e700ca67e977470d79f5571b15b221.zip | |
Drop "CCP4: Software for Macromolecular Crystallography"
obsoletes:
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=160190
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=324059
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=332485
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=367771
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=367773
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=383227
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=448756
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=460502
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=460504
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=466936
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=467040
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=467048
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=476580
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478580
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478586
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478588
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478594
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478604
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=521646
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=528512
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=530878
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=540760
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=555614
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=556498
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=557038
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=561196
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=562780
Signed-off-by: Justin Lecher <jlec@gentoo.org>
Diffstat (limited to 'sci-chemistry/xia2/files/0.3.1.6-fix-syntax.patch')
| -rw-r--r-- | sci-chemistry/xia2/files/0.3.1.6-fix-syntax.patch | 61 |
1 files changed, 0 insertions, 61 deletions
diff --git a/sci-chemistry/xia2/files/0.3.1.6-fix-syntax.patch b/sci-chemistry/xia2/files/0.3.1.6-fix-syntax.patch deleted file mode 100644 index 7770a53c4451..000000000000 --- a/sci-chemistry/xia2/files/0.3.1.6-fix-syntax.patch +++ /dev/null @@ -1,61 +0,0 @@ -diff --git a/xia2-0.3.1.6/Applications/xia2find.py b/xia2-0.3.1.6/Applications/xia2find.py -index 1a3b0e2..e0b8a1e 100755 ---- a/xia2-0.3.1.6/Applications/xia2find.py -+++ b/xia2-0.3.1.6/Applications/xia2find.py -@@ -38,7 +38,7 @@ from Schema.Sweep import SweepFactory - from Experts.FindImages import image2template_directory - - known_image_extensions = ['img', 'mccd', 'mar2300', 'mar1200', 'mar3450', -- 'osc', 'cbf', 'mar2000']] -+ 'osc', 'cbf', 'mar2000'] - known_sweeps = { } - - def is_image_name(file): -diff --git a/xia2-0.3.1.6/Experts/DRStrategyExpert.py b/xia2-0.3.1.6/Experts/DRStrategyExpert.py -index 28b1dc3..dba3ef7 100644 ---- a/xia2-0.3.1.6/Experts/DRStrategyExpert.py -+++ b/xia2-0.3.1.6/Experts/DRStrategyExpert.py -@@ -48,24 +48,24 @@ strategy_dict = { - 'default':{ - 'score':1, - 'pipeline':{ -- 'indexer':'labelit', 'integrater':'xds', 'scaler':'xds-hybrid'} -+ 'indexer':'labelit', 'integrater':'xds', 'scaler':'xds-hybrid'}, - 'depends-on':['labelit.screen', 'xds', 'xscale', 'scala', 'combat', - 'pointless-1.1.0.4']}, - 'default':{ - 'score':2, - 'pipeline':{ -- 'indexer':'labelit', 'integrater':'mosflm', 'scaler':'mosflm'} -+ 'indexer':'labelit', 'integrater':'mosflm', 'scaler':'mosflm'}, - 'depends-on':['labelit.screen', 'mosflm', 'scala', 'reindex', - 'pointless-1.1.0.4']}, - 'mosaic':{ - 'score':1, - 'pipeline':{ -- 'indexer':'labelit', 'integrater':'xds', 'scaler':'xds-hybrid'} -+ 'indexer':'labelit', 'integrater':'xds', 'scaler':'xds-hybrid'}, - 'depends-on':['labelit.screen', 'xds', 'xscale', 'scala', 'combat', - 'pointless-1.1.0.4']}, - 'mosaic':{ - 'score':2, - 'pipeline':{ -- 'indexer':'xds', 'integrater':'xds', 'scaler':'xds'} -+ 'indexer':'xds', 'integrater':'xds', 'scaler':'xds'}, - 'depends-on':['xds', 'xscale']} - } -diff --git a/xia2core-0.3.1.6/Python/Examples/CCP4/Cad.py b/xia2core-0.3.1.6/Python/Examples/CCP4/Cad.py -index 88f9218..5fb6f2a 100644 ---- a/xia2core-0.3.1.6/Python/Examples/CCP4/Cad.py -+++ b/xia2core-0.3.1.6/Python/Examples/CCP4/Cad.py -@@ -49,8 +49,8 @@ def Cad(DriverType = None): - self.add_command_line(hklin) - - self.set_task('Rewriting reflections %s => %s' % -- ` (os.path.split(hklin)[-1], -- ` os.path.split(self.getHklout())[-1])) -+ (os.path.split(hklin)[-1], -+ os.path.split(self.getHklout())[-1])) - - self.start() - |