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| -rw-r--r-- | sci-biology/emboss/emboss-6.6.0-r1.ebuild | 65 |
1 files changed, 65 insertions, 0 deletions
diff --git a/sci-biology/emboss/emboss-6.6.0-r1.ebuild b/sci-biology/emboss/emboss-6.6.0-r1.ebuild new file mode 100644 index 000000000000..6dc9b8566c7e --- /dev/null +++ b/sci-biology/emboss/emboss-6.6.0-r1.ebuild @@ -0,0 +1,65 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +EBO_EAUTORECONF=1 + +inherit emboss-r2 readme.gentoo-r1 + +DESCRIPTION="The European Molecular Biology Open Software Suite - A sequence analysis package" +SRC_URI="ftp://emboss.open-bio.org/pub/${PN^^}/${P^^}.tar.gz" + +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="minimal" +LICENSE+=" Apache-2.0 GPL-3+ CC-BY-3.0" + +RDEPEND=" + !games-action/xbomber + !sys-devel/cons" +PDEPEND=" + !minimal? ( + sci-biology/aaindex + sci-biology/cutg + sci-biology/primer3 + sci-biology/prints + sci-biology/prosite + sci-biology/rebase + )" + +S="${WORKDIR}/${P^^}" + +PATCHES=( + "${FILESDIR}"/${P}_fix-build-system.patch + "${FILESDIR}"/${P}_FORTIFY_SOURCE-fix.patch + "${FILESDIR}"/${P}_plplot-declarations.patch + "${FILESDIR}"/${P}_qa-implicit-declarations.patch +) + +src_install() { + emboss-r2_src_install + + readme.gentoo_create_doc + + # Install env file for setting libplplot and acd files path. + cat > 22emboss <<- EOF || die + # ACD files location + EMBOSS_ACDROOT="${EPREFIX}/usr/share/EMBOSS/acd" + EMBOSS_DATA="${EPREFIX}/usr/share/EMBOSS/data" + EOF + doenvd 22emboss + + # Remove useless dummy files + find "${ED%/}"/usr/share/EMBOSS -name dummyfile -delete || die "Failed to remove dummy files" + + # Move the provided codon files to a different directory. This will avoid + # user confusion and file collisions on case-insensitive file systems (see + # bug #115446). This change is documented in "README.gentoo". + mv "${ED%/}"/usr/share/EMBOSS/data/CODONS{,.orig} \ + || die "Failed to move CODON directory" +} + +pkg_postinst() { + readme.gentoo_print_elog +} |