diff options
Diffstat (limited to 'sci-biology/bedtools/files/bedtools-2.29.2-samtools-1.10.patch')
| -rw-r--r-- | sci-biology/bedtools/files/bedtools-2.29.2-samtools-1.10.patch | 13 |
1 files changed, 13 insertions, 0 deletions
diff --git a/sci-biology/bedtools/files/bedtools-2.29.2-samtools-1.10.patch b/sci-biology/bedtools/files/bedtools-2.29.2-samtools-1.10.patch new file mode 100644 index 000000000000..7cc0e23de2d4 --- /dev/null +++ b/sci-biology/bedtools/files/bedtools-2.29.2-samtools-1.10.patch @@ -0,0 +1,13 @@ +--- a/test/intersect/new_test-intersect.sh ++++ b/test/intersect/new_test-intersect.sh +@@ -975,8 +975,8 @@ + # Test intersect preserve the text header in bam + ############################################################ + echo -e " intersect.new.t78...\c" +-echo -e "@HD VN:1.5 SO:coordinate" > exp +-echo "@HD VN:1.5 SO:coordinate" | samtools view -b | $BT intersect -a /dev/stdin -b b.bed | samtools view -H >obs ++echo -e "@HD VN:1.5 SO:coordinate" > exp ++echo "@HD VN:1.5 SO:coordinate" | samtools view --no-PG -b | $BT intersect -a /dev/stdin -b b.bed | samtools view --no-PG -H >obs + check exp obs + rm exp obs + [[ $FAILURES -eq 0 ]] || exit 1; |