1 files changed, 0 insertions, 57 deletions
diff --git a/sci-biology/cufflinks/cufflinks-2.2.1-r2.ebuild b/sci-biology/cufflinks/cufflinks-2.2.1-r2.ebuild
deleted file mode 100644
index 3892e03e23b2..000000000000
--- a/sci-biology/cufflinks/cufflinks-2.2.1-r2.ebuild
+++ /dev/null
@@ -1,57 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit autotools flag-o-matic python-single-r1 toolchain-funcs
-
-DESCRIPTION="Transcript assembly and differential expression/regulation for RNA-Seq"
-HOMEPAGE="http://cufflinks.cbcb.umd.edu/"
-SRC_URI="http://cufflinks.cbcb.umd.edu/downloads/${P}.tar.gz"
-
-LICENSE="Artistic"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="debug"
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="
-	sci-biology/samtools:0.1-legacy
-	>=dev-libs/boost-1.62.0:=
-	${PYTHON_DEPS}"
-DEPEND="
-	${RDEPEND}
-	dev-cpp/eigen:3
-	virtual/pkgconfig"
-
-PATCHES=(
-	"${FILESDIR}"/${P}-samtools-legacy.patch
-	"${FILESDIR}"/${P}-flags.patch
-	"${FILESDIR}"/${P}-gcc6.patch
-	"${FILESDIR}"/${P}-boost-1.65-tr1-removal.patch
-	"${FILESDIR}"/${P}-gcc7.patch
-	"${FILESDIR}"/${P}-format-security.patch
-	"${FILESDIR}"/${P}-gcc5-make_shared.patch
-)
-
-src_prepare() {
-	default
-	python_fix_shebang src/cuffmerge
-
-	eautoreconf
-}
-
-src_configure() {
-	# keep in sync with Boost
-	append-cxxflags -std=c++14
-	append-cppflags $($(tc-getPKG_CONFIG) --cflags eigen3)
-
-	econf \
-		--disable-optim \
-		--with-boost-libdir="${EPREFIX}/usr/$(get_libdir)/" \
-		--with-bam="${EPREFIX}/usr/" \
-		$(use_enable debug) \
-		PYTHON="${PYTHON}"
-}