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diff --git a/sci-biology/gibbs/gibbs-3.1.ebuild b/sci-biology/gibbs/gibbs-3.1.ebuild
new file mode 100644
index 000000000000..9ed11b435129
--- /dev/null
+++ b/sci-biology/gibbs/gibbs-3.1.ebuild
@@ -0,0 +1,50 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=4
+
+AUTOTOOLS_AUTORECONF=yes
+
+inherit autotools-utils multilib
+
+DESCRIPTION="Identify motifs, conserved regions, in DNA or protein sequences"
+HOMEPAGE="http://bayesweb.wadsworth.org/gibbs/gibbs.html"
+SRC_URI="mirror://gentoo/gibbs-${PV}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE="mpi"
+KEYWORDS="amd64 x86"
+
+DEPEND="
+	mpi? (
+		virtual/mpi
+		sys-cluster/mpe2 )"
+RDEPEND="${DEPEND}"
+
+src_prepare() {
+	sed \
+		-e 's/CFLAGS="$OPTFLAGS/CFLAGS="$CFLAGS $OPTFLAGS/' \
+		-e 's/-Werror//' \
+		-i configure.in || die
+	autotools-utils_src_prepare
+}
+
+src_configure() {
+	if use mpi; then export CC=mpicc; fi
+	local myeconfargs=( $(use_enable mpi) )
+	autotools-utils_src_configure
+}
+
+src_install() {
+	autotools-utils_src_install
+	exeinto /usr/$(get_libdir)/${PN}
+	doexe *.pl
+	dodoc README ChangeLog
+}
+
+pkg_postinst() {
+	einfo "Supplementary Perl scripts for Gibbs have been installed into /usr/$(get_libdir)/${PN}."
+	einfo "These scripts require installation of sci-biology/bioperl."
+}