1 files changed, 53 insertions, 0 deletions
diff --git a/sci-biology/hmmer/hmmer-2.3.2-r3.ebuild b/sci-biology/hmmer/hmmer-2.3.2-r3.ebuild
new file mode 100644
index 000000000000..9868ec14eaae
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+++ b/sci-biology/hmmer/hmmer-2.3.2-r3.ebuild
@@ -0,0 +1,53 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+DESCRIPTION="Sequence analysis using profile hidden Markov models"
+LICENSE="GPL-2"
+HOMEPAGE="http://hmmer.janelia.org/"
+SRC_URI="ftp://ftp.genetics.wustl.edu/pub/eddy/${PN}/${PV}/${P}.tar.gz"
+
+SLOT="0"
+IUSE="threads test"
+KEYWORDS="~alpha amd64 ia64 ~ppc ppc64 ~sparc x86"
+
+DEPEND=""
+RDEPEND=""
+
+src_configure() {
+	econf \
+		--host=${CHOST} \
+		--prefix="${D}"/usr \
+		--exec_prefix="${D}"/usr \
+		--mandir="${D}"/usr/share/man \
+		--enable-lfs \
+		$(use_enable threads)
+}
+
+src_install() {
+	emake DESTDIR="${D}" install
+
+	pushd src >/dev/null || die
+	dolib libhmmer.a
+	insinto /usr/include/hmmer
+	doins *.h
+	popd >/dev/null || die
+
+	pushd squid >/dev/null || die
+	dobin afetch alistat compalign compstruct revcomp seqstat seqsplit sfetch shuffle sreformat sindex weight translate
+	dolib libsquid.a
+	insinto /usr/include/hmmer
+	doins *.h
+	popd >/dev/null || die
+
+	dodoc NOTES
+	newdoc 00README README
+	insinto /usr/share/doc/${PF}
+	doins Userguide.pdf
+}
+
+src_test() {
+	emake check
+}