diff options
Diffstat (limited to 'sci-biology/kalign/files/kalign-2.03-makefile.patch')
| -rw-r--r-- | sci-biology/kalign/files/kalign-2.03-makefile.patch | 39 |
1 files changed, 39 insertions, 0 deletions
diff --git a/sci-biology/kalign/files/kalign-2.03-makefile.patch b/sci-biology/kalign/files/kalign-2.03-makefile.patch new file mode 100644 index 000000000000..61e65c0b73ce --- /dev/null +++ b/sci-biology/kalign/files/kalign-2.03-makefile.patch @@ -0,0 +1,39 @@ +--- a/Makefile.in ++++ b/Makefile.in +@@ -1,7 +1,11 @@ +-PREFIX = /usr/local/bin ++prefix = @prefix@ ++exec_prefix = @exec_prefix@ ++bindir = @bindir@ + TEST = test/ +-CC = gcc +-CFLAGS = -O9 -Wall ++CC = @CC@ ++CFLAGS = @CFLAGS@ ++CPPFLAGS = @CPPFLAGS@ ++LDFLAGS = @LDFLAGS@ + DEBUGFLAGS = -ggdb -Wall + + SOURCES = kalign2_distance_calculation.c kalign2_dp.c kalign2_input.c kalign2_main.c kalign2_mem.c kalign2_inferface.c kalign2_misc.c kalign2_tree.c kalign2_profile.c kalign2_alignment_types.c kalign2_feature.c kalign2_hirschberg.c kalign2_advanced_gaps.c kalign2_hirschberg_dna.c kalign2_output.c kalign2_string_matching.c kalign2_profile_alignment.c +@@ -16,10 +20,7 @@ + .PHONY: clean + + all: $(OBJECTS) +- $(CC) $(CFLAGS) $(OBJECTS) -o $(PROGS) +- +-%.o: %.c +- $(CC) $(CFLAGS) -c $< ++ $(CC) $(LDFLAGS) $(CFLAGS) $(OBJECTS) -o $(PROGS) + + debug: $(DEBUGOBJECTS) + $(CC) $(DEBUGFLAGS) $(DEBUGOBJECTS) -o $(DEBUGPROGS) +@@ -29,7 +30,8 @@ + + + install: +- cp $(PROGS) /usr/local/bin/ ++ mkdir -p $(DESTDIR)$(bindir) ++ cp $(PROGS) $(DESTDIR)$(bindir) + + clean: + rm -f $(PROGS) $(OBJECTS) |