diff options
Diffstat (limited to 'sci-biology/samtools/files/samtools-0.1.20-buildsystem.patch')
| -rw-r--r-- | sci-biology/samtools/files/samtools-0.1.20-buildsystem.patch | 20 |
1 files changed, 10 insertions, 10 deletions
diff --git a/sci-biology/samtools/files/samtools-0.1.20-buildsystem.patch b/sci-biology/samtools/files/samtools-0.1.20-buildsystem.patch index dfdd890b1087..eb9f6934a96f 100644 --- a/sci-biology/samtools/files/samtools-0.1.20-buildsystem.patch +++ b/sci-biology/samtools/files/samtools-0.1.20-buildsystem.patch @@ -75,15 +75,15 @@ .PHONY:all-recur lib-recur clean-recur cleanlocal-recur install-recur -lib:libbam.a -+lib:libbam-legacy.a ++lib:libbam-0.1-legacy.a -libbam.a:$(LOBJS) -+libbam-legacy.a:$(LOBJS) ++libbam-0.1-legacy.a:$(LOBJS) $(AR) -csru $@ $(LOBJS) samtools:lib-recur $(AOBJS) - $(CC) $(CFLAGS) -o $@ $(AOBJS) $(LDFLAGS) libbam.a -Lbcftools -lbcf $(LIBPATH) $(LIBCURSES) -lm -lz -lpthread -+ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ $(AOBJS) libbam-legacy.a -Lbcftools -lbcf $(LIBPATH) $(LIBCURSES) -lm -lz -lpthread ++ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ $(AOBJS) -L. -lbam-0.1-legacy -Lbcftools -lbcf $(LIBPATH) $(LIBCURSES) -lm -lz -lpthread razip:razip.o razf.o $(KNETFILE_O) - $(CC) $(CFLAGS) -o $@ $^ -lz @@ -105,21 +105,21 @@ -libbam.1.dylib-local:$(LOBJS) - libtool -dynamic $(LOBJS) -o libbam.1.dylib -lc -lz -+libbam-legacy.1.dylib-local:$(LOBJS) -+ libtool -dynamic $(LOBJS) -o libbam-legacy.1.dylib -lc -lz ++libbam-0.1-legacy.1.dylib-local:$(LOBJS) ++ libtool -dynamic $(LOBJS) -o libbam-0.1-legacy.1.dylib -lc -lz -libbam.so.1-local:$(LOBJS) - $(CC) -shared -Wl,-soname,libbam.so -o libbam.so.1 $(LOBJS) -lc -lz -+libbam-legacy.so.1-local:$(LOBJS) -+ $(CC) $(LDFLAGS) -shared -Wl,-soname,libbam-legacy.so -o libbam-legacy.so.1 $(LOBJS) -lc -lz -lm -lpthread ++libbam-0.1-legacy.so.1-local:$(LOBJS) ++ $(CC) $(LDFLAGS) -shared -Wl,-soname,libbam-0.1-legacy.so -o libbam-0.1-legacy.so.1 $(LOBJS) -lc -lz -lm -lpthread dylib: @$(MAKE) cleanlocal; \ case `uname` in \ - Linux) $(MAKE) CFLAGS="$(CFLAGS) -fPIC" libbam.so.1-local;; \ - Darwin) $(MAKE) CFLAGS="$(CFLAGS) -fPIC" libbam.1.dylib-local;; \ -+ Linux) $(MAKE) CFLAGS="$(CFLAGS) -fPIC" libbam-legacy.so.1-local;; \ -+ Darwin) $(MAKE) CFLAGS="$(CFLAGS) -fPIC" libbam-legacy.1.dylib-local;; \ ++ Linux) $(MAKE) CFLAGS="$(CFLAGS) -fPIC" libbam-0.1-legacy.so.1-local;; \ ++ Darwin) $(MAKE) CFLAGS="$(CFLAGS) -fPIC" libbam-0.1-legacy.1.dylib-local;; \ *) echo 'Unknown OS';; \ esac @@ -162,7 +162,7 @@ bamcheck:bamcheck.o - $(CC) $(CFLAGS) -o $@ bamcheck.o -L.. -lm -lbam -lpthread -lz -+ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ bamcheck.o -L.. -lm -lbam-legacy -lpthread -lz ++ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ bamcheck.o -L.. -lm -lbam-0.1-legacy -lpthread -lz bamcheck.o:bamcheck.c ../faidx.h ../khash.h ../sam.h ../razf.h $(CC) $(CFLAGS) -c -I.. -o $@ bamcheck.c |