diff options
Diffstat (limited to 'sci-biology/samtools')
| -rw-r--r-- | sci-biology/samtools/samtools-0.1.20-r4.ebuild | 10 |
1 files changed, 5 insertions, 5 deletions
diff --git a/sci-biology/samtools/samtools-0.1.20-r4.ebuild b/sci-biology/samtools/samtools-0.1.20-r4.ebuild index 2c76f0580f81..d598a3292728 100644 --- a/sci-biology/samtools/samtools-0.1.20-r4.ebuild +++ b/sci-biology/samtools/samtools-0.1.20-r4.ebuild @@ -36,16 +36,16 @@ src_install() { # install executables and hide them away from sight dobin samtools bcftools/{bcftools,vcfutils.pl} misc/{*.py,*.pl,wgsim,ace2sam} \ misc/{md5sum-lite,maq2sam-short,bamcheck,maq2sam-long,md5fa,plot-bamcheck} - mv "${ED%/}"/usr/{bin,${PN}-${SLOT}} || die - mkdir "${ED%/}"/usr/bin || die - mv "${ED%/}"/usr/{${PN}-${SLOT},bin/} || die + mv "${ED}"/usr/{bin,${PN}-${SLOT}} || die + mkdir "${ED}"/usr/bin || die + mv "${ED}"/usr/{${PN}-${SLOT},bin/} || die # remove py2 script, has been removed upstream anyways # https://github.com/samtools/samtools/issues/1125 - rm "${ED%/}"/usr/bin/${PN}-${SLOT}/varfilter.py || die + rm "${ED}"/usr/bin/${PN}-${SLOT}/varfilter.py || die # fix perl shebangs - pushd "${ED%/}"/usr/bin/${PN}-${SLOT} >/dev/null || die + pushd "${ED}"/usr/bin/${PN}-${SLOT} >/dev/null || die local i for i in plot-bamcheck *.pl; do sed -e '1s:.*:#!/usr/bin/env perl:' -i "${i}" || die |