1 files changed, 0 insertions, 50 deletions
diff --git a/sci-biology/vcftools/files/vcftools-0.1.14-buildsystem.patch b/sci-biology/vcftools/files/vcftools-0.1.14-buildsystem.patch
deleted file mode 100644
index 126a709385db..000000000000
--- a/sci-biology/vcftools/files/vcftools-0.1.14-buildsystem.patch
+++ /dev/null
@@ -1,50 +0,0 @@
-* Add prefix in Makefiles, not the configure script
-* Use AC_SEARCH_LIBS instead of AC_CHECK_LIB,
-  as it is more flexible and helps us with LAPACK
-* Use correct ZLIB_CFLAGS instead of non-existent ZLIB_CPPFLAGS
-
---- a/configure.ac
-+++ b/configure.ac
-@@ -34,7 +34,7 @@
-       [--with-pmdir=DIR],
-       [install Perl modules in DIR]),
-     [PMDIR=${withval}],
--    [PMDIR='${prefix}'/"$pmdir_relative_path"])
-+    [PMDIR="$pmdir_relative_path"])
- 
- AC_SUBST([PMDIR])
- 
-@@ -73,9 +73,9 @@
-               [pca=${enableval}],
-               [pca=no])
- 
--if test "x${pca}" = "xyes" ; then
--  AC_CHECK_LIB(lapack, dgeev_)
--fi
-+AS_IF([test "x${pca}" = "xyes"],[
-+  AC_SEARCH_LIBS([dgeev_], [lapack])
-+])
- 
- # Generate output.
- AC_CONFIG_FILES([Makefile
---- a/src/cpp/Makefile.am
-+++ b/src/cpp/Makefile.am
-@@ -1,6 +1,6 @@
- bin_PROGRAMS = vcftools
- 
--vcftools_CPPFLAGS = $(ZLIB_CPPFLAGS)
-+vcftools_CPPFLAGS = $(ZLIB_CFLAGS)
- vcftools_LDADD = $(ZLIB_LIBS)
- 
- vcftools_SOURCES = \
---- a/src/perl/Makefile.am
-+++ b/src/perl/Makefile.am
-@@ -24,7 +24,7 @@
- 	vcf-tstv \
- 	vcf-validator
- 
--pmdir = $(PMDIR)
-+pmdir = $(exec_prefix)/$(PMDIR)
- 
- dist_pm_DATA = \
- 	FaSlice.pm \