diff options
Diffstat (limited to 'sci-chemistry/p3d')
| -rw-r--r-- | sci-chemistry/p3d/Manifest | 1 | ||||
| -rw-r--r-- | sci-chemistry/p3d/metadata.xml | 21 | ||||
| -rw-r--r-- | sci-chemistry/p3d/p3d-0.4.3.ebuild | 35 | ||||
| -rw-r--r-- | sci-chemistry/p3d/p3d-9999.ebuild | 30 |
4 files changed, 87 insertions, 0 deletions
diff --git a/sci-chemistry/p3d/Manifest b/sci-chemistry/p3d/Manifest new file mode 100644 index 000000000000..9b2f9b5b9c4d --- /dev/null +++ b/sci-chemistry/p3d/Manifest @@ -0,0 +1 @@ +DIST p3d-0.4.3.tar.gz 7213577 RMD160 2a251097bf7f83b27e519b20e4110fe330b2b6a3 SHA1 ced099dcaa28517c6095c1153f3a19bb6c78494c SHA256 b968eb37c0d27ad1f4f46f8a942fb2b62fbcdb50b31a1e66875e2cdc036a9932 diff --git a/sci-chemistry/p3d/metadata.xml b/sci-chemistry/p3d/metadata.xml new file mode 100644 index 000000000000..bd602bd0e68a --- /dev/null +++ b/sci-chemistry/p3d/metadata.xml @@ -0,0 +1,21 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-chemistry</herd> + <maintainer> + <email>jlec@gentoo.org</email> + </maintainer> + <longdescription> +p3d was developed in order to offer a Python module that is powerful and fast, +yet intuitive to use. The simplicity of p3d is due to the usage of object +oriented programming (i.e. atoms are treated as vectors), the implementation +of a query parser that translates queries readable by humans into a combination +of algebra set operations the fact that no additional Python packages are +necessary. The speed is due to the usage of a binary space partitioning (BSP) +tree which allows very fast queries in 3D (Henry et al. 1980). The additional +synergy is obtained by the flexible combination of both speed and complexity in +the queries to the structural data. The combination of these factors makes p3d +the optimal module to rapidly develop new and powerful bioinformatic tools that +follow the Python philosophy of making the source code readable. +</longdescription> +</pkgmetadata> diff --git a/sci-chemistry/p3d/p3d-0.4.3.ebuild b/sci-chemistry/p3d/p3d-0.4.3.ebuild new file mode 100644 index 000000000000..294acb075860 --- /dev/null +++ b/sci-chemistry/p3d/p3d-0.4.3.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=3 + +PYTHON_DEPEND="2" +SUPPORT_PYTHON_ABIS="1" + +inherit distutils versionator + +MY_P="${PN}-$(replace_version_separator 3 -)" +GITHUB_ID="gb8b9a75" + +DESCRIPTION="Python module for structural bioinformatics" +HOMEPAGE="http://p3d.fufezan.net/" +SRC_URI="https://nodeload.github.com/fu/${PN}/tarball/${PV} -> ${P}.tar.gz" + +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +LICENSE="GPL-3" +IUSE="examples" + +src_prepare() { + mv fu* ${P} + distutils_src_prepare +} + +src_install() { + distutils_src_install + if use examples; then + insinto /usr/share/${PN} + doins -r pdbs exampleScripts || die + fi +} diff --git a/sci-chemistry/p3d/p3d-9999.ebuild b/sci-chemistry/p3d/p3d-9999.ebuild new file mode 100644 index 000000000000..e0f8087a0cc2 --- /dev/null +++ b/sci-chemistry/p3d/p3d-9999.ebuild @@ -0,0 +1,30 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=3 + +PYTHON_DEPEND="2" +SUPPORT_PYTHON_ABIS="1" + +inherit git-2 distutils versionator + +DESCRIPTION="Python module for structural bioinformatics" +HOMEPAGE="http://p3d.fufezan.net/" +SRC_URI="" +EGIT_REPO_URI="git://github.com/fu/p3d.git" + +SLOT="0" +KEYWORDS="" +LICENSE="GPL-3" +IUSE="examples" + +S="${WORKDIR}"/${PN} + +src_install() { + distutils_src_install + if use examples; then + insinto /usr/share/${PN} + doins -r pdbs exampleScripts || die + fi +} |