1 files changed, 0 insertions, 83 deletions
diff --git a/sci-chemistry/pdb-tools/pdb-tools-0.2.1-r2.ebuild b/sci-chemistry/pdb-tools/pdb-tools-0.2.1-r2.ebuild
deleted file mode 100644
index a476a801611a..000000000000
--- a/sci-chemistry/pdb-tools/pdb-tools-0.2.1-r2.ebuild
+++ /dev/null
@@ -1,83 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit fortran-2 python-single-r1 toolchain-funcs
-
-MY_PN="pdbTools"
-
-DESCRIPTION="Tools for manipulating and calculations on wwPDB macromolecule structure files"
-HOMEPAGE="https://github.com/harmslab/pdbtools"
-SRC_URI="https://${PN}.googlecode.com/files/${MY_PN}_${PV}.tar.gz"
-
-SLOT="0"
-LICENSE="GPL-3"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="${PYTHON_DEPS}"
-DEPEND="${RDEPEND}"
-
-S="${WORKDIR}"/${MY_PN}_${PV}
-
-pkg_setup() {
-	python-single-r1_pkg_setup
-	fortran-2_pkg_setup
-}
-
-src_prepare() {
-	sed \
-		-e "s:script_dir,\"pdb_data\":\"${EPREFIX}/usr/share/${PN}\",\"pdb_data\":g" \
-		-i pdb_sasa.py || die
-	sed \
-		-e "/satk_path =/s:^.*$:satk_path = \"${EPREFIX}/usr/bin\":g" \
-		-i pdb_satk.py || die
-	sed \
-		-e 's:> %:>%:g' \
-		-i pdb_seq.py || die
-
-	sed \
-		-e "/import/s:helper:${PN/-/_}.helper:g" \
-		-i *.py || die
-}
-
-src_compile() {
-	mkdir bin
-	cd satk
-	for i in *.f; do
-		einfo "$(tc-getFC) ${FFLAGS} ${LDFLAGS} ${i} -o ${i/.f}"
-		$(tc-getFC) ${FFLAGS} -c ${i} -o ${i/.f/.o} || die
-		$(tc-getFC) ${LDFLAGS} -o ../bin/${i/.f} ${i/.f/.o} || die
-		sed \
-			-e "s:${i/.f}.out:${i/.f}:g" \
-			-i ../pdb_satk.py || die
-	done
-}
-
-src_install() {
-	local script
-	insinto /usr/share/${PN}
-	doins -r pdb_data/peptides
-	rm -rf pdb_data/peptides || die
-
-	python_domodule pdb_data
-
-	python_moduleinto ${PN/-/_}
-	python_domodule helper *.py
-
-	for i in pdb_*.py; do
-		cat > ${i/.py} <<- EOF
-		#!${EPREFIX}/bin/bash
-		${PYTHON} -O "$(python_get_sitedir)/${PN/-/_}/${i}" \$@
-		EOF
-		dobin ${i/.py}
-	done
-
-	dobin bin/*
-	dodoc README
-}