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# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
PYTHON_COMPAT=( python3_{7..9} )
inherit distutils-r1
DESCRIPTION="Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files"
HOMEPAGE="https://htseq.readthedocs.io/"
if [[ ${PV} == *9999 ]]; then
inherit git-r3
EGIT_REPO_URI="https://github.com/htseq/htseq.git"
else
SRC_URI="https://github.com/htseq/htseq/archive/release_${PV}.tar.gz -> ${P}.tar.gz"
S="${WORKDIR}"/htseq-release_${PV}
KEYWORDS="~amd64"
fi
LICENSE="GPL-3+"
SLOT="0"
RDEPEND="
dev-python/numpy[${PYTHON_USEDEP}]
dev-python/matplotlib[${PYTHON_USEDEP}]
sci-biology/pysam[${PYTHON_USEDEP}]"
DEPEND="${RDEPEND}"
BDEPEND="
>=dev-lang/swig-3.0.8
dev-python/cython[${PYTHON_USEDEP}]"
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