blob: 9576a78bd1dd5ddb6153ded13aa801bf6719fac7 (
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--- a/Makefile
+++ b/Makefile
@@ -183,7 +168,7 @@
$(BIN_DIR)/intersectBed: | $(BIN_DIR)
@echo "- Creating executables for old CLI."
- @python scripts/makeBashScripts.py
+ $(EPYTHON) scripts/makeBashScripts.py
@chmod +x bin/*
@echo "done."
--- a/src/utils/BamTools/Makefile.frag
+++ b/src/utils/BamTools/Makefile.frag
@@ -1,4 +1,4 @@
src/utils/BamTools/include/BamAlignment.mapping.hpp: src/utils/BamTools/mapping/BamAlignment.py src/utils/BamTools/mapping/BamAlignment.map
src/utils/BamTools/include/%.mapping.hpp: src/utils/BamTools/mapping/%.py src/utils/BamTools/mapping/%.map
- python $^ > $@
+ $(EPYTHON) $^ > $@
--- a/test/bigchroms/test-bigchroms.sh
+++ b/test/bigchroms/test-bigchroms.sh
@@ -28,7 +28,7 @@
rm obs
if [[ "$BT_NO_BIG_FILES" != "" ]]; then
-python make-big-chrom.py
+${EPYTHON} make-big-chrom.py
echo -e " bigchroms.t03...big get fasta \c"
$BT getfasta -fi bigx.fasta -bed bigx.bed | tail -1 > obs
--- a/test/fisher/cmp.sh
+++ b/test/fisher/cmp.sh
@@ -3,7 +3,7 @@
echo "fisher,shuffled"
for i in $(seq 1000); do
- fisher=$(python ./sim.py | tail -1 | cut -f 2)
+ fisher=$(${EPYTHON} ./sim.py | tail -1 | cut -f 2)
shuffle=$(bash shuf.sh)
echo "$fisher,$shuffle"
done
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