blob: 04c5e4524e2e16863263a190dae0555ee86a8842 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
|
# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=6
PYTHON_COMPAT=( python2_7 )
inherit autotools perl-functions python-single-r1 versionator
MY_PV=$(get_version_component_range 1-3)
MY_P=${PN}_${MY_PV}
DESCRIPTION="The MEME/MAST system - Motif discovery and search"
HOMEPAGE="http://meme-suite.org/tools/meme"
SRC_URI="http://meme-suite.org/meme-software/${MY_PV}/${MY_P}.tar.gz"
LICENSE="meme"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="debug doc examples mpi"
RDEPEND="
${PYTHON_DEPS}
app-shells/tcsh
dev-libs/libxml2:2
dev-libs/libxslt
sys-libs/zlib
app-text/ghostscript-gpl
media-gfx/imagemagick
dev-lang/perl:=
dev-perl/HTML-Parser
dev-perl/HTML-Template
dev-perl/Log-Log4perl
dev-perl/Math-CDF
dev-perl/XML-Compile-SOAP
dev-perl/XML-Compile-WSDL11
dev-perl/XML-Parser
dev-perl/XML-Simple
virtual/perl-Data-Dumper
virtual/perl-Exporter
virtual/perl-File-Path
virtual/perl-File-Spec
virtual/perl-File-Temp
virtual/perl-Getopt-Long
virtual/perl-Scalar-List-Utils
virtual/perl-Time-HiRes
mpi? ( virtual/mpi )"
DEPEND="${RDEPEND}"
REQUIRED_USE="${PYTHON_REQUIRED_USE}"
S="${WORKDIR}/${MY_P}"
PATCHES=(
"${FILESDIR}"/${PN}-4.11.2_p2-patch1.patch
"${FILESDIR}"/${PN}-4.11.2_p2-patch2.patch
"${FILESDIR}"/${PN}-4.11.2_p2-fix-build-system.patch
)
pkg_setup() {
python-single-r1_pkg_setup
perl_set_version
}
src_prepare() {
default
eautoreconf
}
src_configure() {
econf \
--sysconfdir="${EPREFIX}"/etc/${PN} \
--with-logs="${EPREFIX}"/var/log/${PN} \
--with-perl=perl \
--with-convert=convert \
--with-gs=gs \
--disable-build-libxml2 \
--disable-build-libxslt \
$(use_enable debug) \
$(use_enable doc) \
$(use_enable examples) \
$(use_enable !mpi serial) \
--with-perl-dir="${VENDOR_LIB#${EPREFIX}/usr}" \
PYTHON="${EPYTHON}"
# delete bundled libs, just to be sure. These need
# to be removed after econf, else AC_OUTPUT will fail
rm -r src/{libxml2,lib{,e}xslt} || die
}
src_test() {
# bug #297070
emake -j1 test
}
src_install() {
default
docompress -x /usr/share/doc/${PF}/examples
# prefix all binaries with 'meme-', in order
# to prevent collisions, bug 455010
cd "${ED%/}"/usr/bin/ || die
local i
for i in *; do
if [[ $i != meme-* ]]; then
mv {,meme-}"${i}" || die
fi
done
keepdir /var/log/meme
}
|
GitWeb