summaryrefslogtreecommitdiff
blob: d12d3c9b4399073d0dbff2a3c19f0200fcfbc6ca (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2

EAPI=5

inherit eutils flag-o-matic fortran-2 toolchain-funcs

DESCRIPTION="A suite of algorithms for ecological bioinformatics"
HOMEPAGE="http://www.mothur.org/"
SRC_URI="http://www.mothur.org/w/images/c/cb/Mothur.${PV}.zip -> ${P}.zip"

LICENSE="GPL-3"
SLOT="0"
IUSE="mpi +readline"
KEYWORDS="amd64 x86"

RDEPEND="
	sci-biology/uchime
	mpi? ( virtual/mpi )"
DEPEND="${RDEPEND}
	app-arch/unzip"

S=${WORKDIR}/Mothur.source

pkg_setup() {
	fortran-2_pkg_setup
	use mpi && export CXX=mpicxx || export CXX=$(tc-getCXX)
	use amd64 && append-cppflags -DBIT_VERSION
}

src_prepare() {
	epatch \
		"${FILESDIR}"/${P}-makefile.patch \
		"${FILESDIR}"/${P}-overflows.patch
}

src_compile() {
	emake USEMPI=$(usex mpi) USEREADLINE=$(usex readline)
}

src_install() {
	dobin ${PN}
}