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# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
inherit toolchain-funcs
DESCRIPTION="Automated de novo identification of repeat families from genomic sequences"
HOMEPAGE="http://www.repeatmasker.org/RepeatModeler.html"
SRC_URI="http://www.repeatmasker.org/${P^^}.tar.gz"
S="${WORKDIR}/${P^^}"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="examples"
RDEPEND="dev-lang/perl"
PATCHES=(
"${FILESDIR}"/${PN}-1.08-buffer-overflow.patch
"${FILESDIR}"/${PN}-1.08-perl-shebangs.patch
"${FILESDIR}"/${PN}-1.08-Wimplicit-function-declaration.patch
)
src_prepare() {
default
sed -i "s|$path = \"\";|$path = \"${EPREFIX}/usr/libexec/recon\";|" scripts/recon.pl || die
}
src_compile() {
emake CC="$(tc-getCC)" CFLAGS="${CFLAGS}" -C src
}
src_install() {
dobin scripts/*
exeinto /usr/libexec/recon
doexe src/{edgeredef,eledef,eleredef,famdef,imagespread}
newdoc {00,}README
if use examples; then
insinto /usr/share/recon
doins -r Demos
fi
}
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