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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
inherit eutils flag-o-matic toolchain-funcs
MY_HASH="8cbe486"
MY_PV="${PV}.${MY_HASH}"
MY_P="T-COFFEE_distribution_Version_${MY_PV}"
DESCRIPTION="A multiple sequence alignment package"
HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"
SRC_URI="http://www.tcoffee.org/Packages/Stable/Version_${MY_PV}/${MY_P}.tar.gz"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~amd64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux"
IUSE="examples"
RDEPEND="
sci-biology/clustalw
sci-chemistry/tm-align"
DEPEND=""
S="${WORKDIR}/${MY_P}"
src_prepare() {
sed \
-e '/@/s:.*;:\t:g' \
-e '/Linking/s:$(CC):$(CC) $(CFLAGS) $(LDFLAGS):g' \
-i t_coffee_source/makefile || die
epatch \
"${FILESDIR}"/${P}-mayhem.patch \
"${FILESDIR}"/${P}-set_proper_dir_permissions.patch
}
src_compile() {
[[ $(gcc-version) == "3.4" ]] || \
[[ $(gcc-version) == "4.1" ]] && \
append-flags -fno-unit-at-a-time
emake \
V=1 \
CC="$(tc-getCXX)" \
CFLAGS="${CXXFLAGS} -Wno-write-strings -Wno-unused-result" \
-C t_coffee_source t_coffee
}
src_install() {
dobin t_coffee_source/t_coffee
if use examples; then
insinto /usr/share/${PN}
doins -r example
fi
}
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