diff options
| author |   Andrey Kislyuk <kislyuk@onyx.(none)> | 2009-09-27 10:57:29 -0400 |
|---|---|---|
| committer | Andrey Kislyuk <kislyuk@onyx.(none)> | 2009-09-27 10:57:29 -0400 |
| commit | 5ae79e9f8ea29106bc2879d3a624aac3809eb59e (patch) | |
| tree | f0876c6c3ce66f026458412a07de5c044accc51d | |
| parent | Merge branch 'master' of git+ssh://git@git.overlays.gentoo.org/proj/sci (diff) | |
| download | sci-5ae79e9f8ea29106bc2879d3a624aac3809eb59e.tar.gz sci-5ae79e9f8ea29106bc2879d3a624aac3809eb59e.tar.bz2 sci-5ae79e9f8ea29106bc2879d3a624aac3809eb59e.zip | |
In main tree
| -rw-r--r-- | sci-biology/wgs-assembler/ChangeLog | 12 | ||||
| -rw-r--r-- | sci-biology/wgs-assembler/Manifest | 14 | ||||
| -rw-r--r-- | sci-biology/wgs-assembler/metadata.xml | 9 | ||||
| -rw-r--r-- | sci-biology/wgs-assembler/wgs-assembler-5.4.ebuild | 58 |
4 files changed, 0 insertions, 93 deletions
diff --git a/sci-biology/wgs-assembler/ChangeLog b/sci-biology/wgs-assembler/ChangeLog deleted file mode 100644 index e003d5338..000000000 --- a/sci-biology/wgs-assembler/ChangeLog +++ /dev/null @@ -1,12 +0,0 @@ -# ChangeLog for sci-biology/wgs-assembler -# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/wgs-assembler/ChangeLog,v 1.1 2009/06/05 15:16:05 weaver Exp $ - - 02 Aug 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog: - Version bump - -*wgs-assembler-5.3 (05 Jun 2009) - - 05 Jun 2009; Andrey Kislyuk <weaver@gentoo.org> +wgs-assembler-5.3.ebuild: - New package, ebuild written by me - diff --git a/sci-biology/wgs-assembler/Manifest b/sci-biology/wgs-assembler/Manifest deleted file mode 100644 index ddd7282c7..000000000 --- a/sci-biology/wgs-assembler/Manifest +++ /dev/null @@ -1,14 +0,0 @@ ------BEGIN PGP SIGNED MESSAGE----- -Hash: SHA1 - -DIST wgs-5.4.tar.bz2 1876180 RMD160 1f8a82f7523509ef271c7e99d560f68367ab16a1 SHA1 2dbc316c8307181246a22d622c824885be373333 SHA256 698b22bd63fa2bb4fe7f164a92c92f82474bc8fc64c37704258ebb3bdc86d7bf -EBUILD wgs-assembler-5.4.ebuild 1511 RMD160 c73ddde3dbb60f6e9b7c6a53d1482a5e70614696 SHA1 1efa51a72608558f777aa23f9005e8fac56de00e SHA256 3632b575a05ab2536f7f1809067c9f5b21a9c0bbedf25231b2e10fdb323b0737 -MISC ChangeLog 448 RMD160 180d861216dbbb0a498dd60bd40c0971b90b77b7 SHA1 cc3c026689defdb90012ba6ff5267f9870ae032f SHA256 660e525e1a0ffb981bcc4f4a21fca90d72d48597ec4084e56d982b20d87de662 -MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 ------BEGIN PGP SIGNATURE----- -Version: GnuPG v2.0.11 (GNU/Linux) - -iEYEARECAAYFAkp2oBQACgkQ5BmOA85PVLijOwCgo0jtSAMEB6g+FYQ5CJL9HCgL -ojgAn0vyL8WEgvGxAgmUw9Zhzq4yK22c -=j2mt ------END PGP SIGNATURE----- diff --git a/sci-biology/wgs-assembler/metadata.xml b/sci-biology/wgs-assembler/metadata.xml deleted file mode 100644 index 3302123e5..000000000 --- a/sci-biology/wgs-assembler/metadata.xml +++ /dev/null @@ -1,9 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer> - <email>weaver@gentoo.org</email> - <name>Andrey Kislyuk</name> - </maintainer> - <herd>sci-biology</herd> -</pkgmetadata> diff --git a/sci-biology/wgs-assembler/wgs-assembler-5.4.ebuild b/sci-biology/wgs-assembler/wgs-assembler-5.4.ebuild deleted file mode 100644 index 165f2b068..000000000 --- a/sci-biology/wgs-assembler/wgs-assembler-5.4.ebuild +++ /dev/null @@ -1,58 +0,0 @@ -# Copyright 1999-2009 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/wgs-assembler/wgs-assembler-5.3.ebuild,v 1.1 2009/06/05 15:16:05 weaver Exp $ - -EAPI="2" - -inherit eutils - -DESCRIPTION="Whole-genome shotgun assembler based on the Celera Assembler" -HOMEPAGE="http://sourceforge.net/projects/wgs-assembler/" -SRC_URI="mirror://sourceforge/${PN}/wgs-${PV}.tar.bz2" - -LICENSE="GPL-2" -SLOT="0" -IUSE="" -KEYWORDS="~x86 ~amd64" - -DEPEND="x11-libs/libXt" -RDEPEND="${DEPEND} - app-shells/tcsh - dev-perl/Log-Log4perl" - -S="${WORKDIR}/wgs-${PV}" - -src_configure() { - cd "${S}/kmer" - ./configure.sh || die -} - -src_compile() { - # not really an install target - # WARNING: untracked failure compiling the second target - emake -C kmer -j1 install || die - emake -C src -j1 SITE_NAME=LOCAL || die -} - -src_install() { - OSTYPE=$(uname) - MACHTYPE=$(uname -m) - MACHTYPE=${MACHTYPE/x86_64/amd64} - MY_S="${OSTYPE}-${MACHTYPE}" - sed -i 's|#!/usr/local/bin/|#!/usr/bin/env |' $(find $MY_S -type f) || die - - sed -i '/sub getBinDirectory/ a return "/usr/bin";' ${MY_S}/bin/runCA* || die - sed -i '1 a use lib "/usr/share/'${PN}'/lib";' $(find $MY_S -name '*.p*') || die - - dobin kmer/${MY_S}/bin/* || die - dolib.a kmer/${MY_S}/lib/* || die - - insinto /usr/share/${PN} - doins -r ${MY_S}/bin/spec - insinto /usr/share/${PN}/lib - doins -r ${MY_S}/bin/TIGR || die - rm -rf ${MY_S}/bin/{TIGR,spec} - dobin ${MY_S}/bin/* || die - dolib.a ${MY_S}/lib/* || die - dodoc README -} |