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Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Package-Manager: Portage-2.3.14, Repoman-2.3.6
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Also I wrote a few cleanup patches to expose THREADS
variable and cleanup the code.
Package-Manager: Portage-2.3.14, Repoman-2.3.6
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This will facilitate simultaneous installs of jeelyfish2
and jellyfish, so that sci-biology/SEECER and sci-biology/quorum
could be installed at the same time (both calling "jellyfish"
but quorum needs version 2 and SEECER version 1.
See list of files at https://packages.debian.org/unstable/jellyfish1
Package-Manager: Portage-2.3.14, Repoman-2.3.6
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Package-Manager: Portage-2.3.14, Repoman-2.3.6
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Package-Manager: Portage-2.3.14, Repoman-2.3.6
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Package-Manager: Portage-2.3.14, Repoman-2.3.6
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Package-Manager: Portage-2.3.14, Repoman-2.3.6
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With bump to EAPI=6 the patch does not apply anymore
due to extraneous 'SEECER-0.1.3/SEECER/'.
Package-Manager: Portage-2.3.14, Repoman-2.3.6
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Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Signed-off-by: Justin Lecher <jlec@gentoo.org>
Package-Manager: Portage-2.3.14, Repoman-2.3.6
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Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Signed-off-by: Justin Lecher <jlec@gentoo.org>
Package-Manager: Portage-2.3.14, Repoman-2.3.6
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Signed-off-by: Justin Lecher <jlec@gentoo.org>
Package-Manager: Portage-2.3.14, Repoman-2.3.6
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Signed-off-by: Justin Lecher <jlec@gentoo.org>
Package-Manager: Portage-2.3.14, Repoman-2.3.6
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Signed-off-by: Justin Lecher <jlec@gentoo.org>
Package-Manager: Portage-2.3.14, Repoman-2.3.6
Signed-off-by: Justin Lecher <jlec@gentoo.org>
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* Drop old
Signed-off-by: Justin Lecher <jlec@gentoo.org>
Package-Manager: Portage-2.3.14, Repoman-2.3.6
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* Fix repoman warnings
Signed-off-by: Justin Lecher <jlec@gentoo.org>
Package-Manager: Portage-2.3.14, Repoman-2.3.6
Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Package-Manager: Portage-2.3.14, Repoman-2.3.6
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Seems Gentoo newer compiled/installed the lastz_32 binary, which allows
indexing larger genomes. This ebuild fixes that for current version
and contains practically same Makefile-related patch as before.
Package-Manager: Portage-2.3.13, Repoman-2.3.3
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Package-Manager: Portage-2.3.13, Repoman-2.3.3
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Package-Manager: Portage-2.3.13, Repoman-2.3.3
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Package-Manager: Portage-2.3.13, Repoman-2.3.3
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Package-Manager: Portage-2.3.13, Repoman-2.3.3
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Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Package-Manager: Portage-2.3.11, Repoman-2.3.3
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Package-Manager: Portage-2.3.8, Repoman-2.3.3
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If host MPI is configured to use knem, petsc needs to access /dev/knem as well.
Package-Manager: Portage-2.3.8, Repoman-2.3.3
Signed-off-by: Andrew Savchenko <bircoph@gentoo.org>
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>=sci-libs/superlu-5 is required, see
https://lists.debian.org/debian-science/2016/05/msg00059.html
This also happens at our local Gentoo HPC setup.
Package-Manager: Portage-2.3.8, Repoman-2.3.3
Signed-off-by: Andrew Savchenko <bircoph@gentoo.org>
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Change over to https in all ebuilds to keep repoman happy.
Closes: https://github.com/gentoo/sci/pull/815
Closes: https://github.com/gentoo/sci/issues/813
Package-Manager: Portage-2.3.8, Repoman-2.3.3
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Package-Manager: Portage-2.3.6, Repoman-2.3.1
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Closes: https://github.com/gentoo/sci/pull/798
Package-Manager: Portage-2.3.6, Repoman-2.3.2
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made env.dfile prefix-compatible
Closes: https://github.com/gentoo/sci/pull/804
Package-Manager: Portage-2.3.8, Repoman-2.3.3
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