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* dev-perl/opal-client: Bump to EAPI=5Justin Lecher2014-11-013-7/+20
| | | | Package-Manager: portage-2.2.14
* dev-perl/Lab-VISA: Bump to EAPI=5Justin Lecher2014-11-013-4/+10
| | | | Package-Manager: portage-2.2.14
* dev-perl/Lab-Tools: Bump to EAPI=5Justin Lecher2014-11-012-8/+15
| | | | Package-Manager: portage-2.2.14
* perl-core/encoding-warnings: Bump to EAPI=5Justin Lecher2014-11-013-4/+10
| | | | Package-Manager: portage-2.2.14
* virtual/perl-encoding-warnings: Add new virtualJustin Lecher2014-11-013-0/+31
| | | | Package-Manager: portage-2.2.14
* dev-perl/Lab-Instrument: Bump to EAPI=5Justin Lecher2014-11-013-9/+23
| | | | Package-Manager: portage-2.2.14
* sci-chemistry/pymol: Make it really multi py ABI ready; use internal apbs pluginJustin Lecher2014-10-303-5/+183
| | | | Package-Manager: portage-2.2.14
* sci-chemistry/pymol: Add missing PYTHON_USEDEPJustin Lecher2014-10-272-2/+5
| | | | Package-Manager: portage-2.2.14
* Merge remote-tracking branch 'github/master'Justin Lecher2014-10-2739-749/+657
|\ | | | | | | | | | | | | | | | | | | | | | | * github/master: sci-chemistry/freeon: Drop obsolete versions Moved to tree sci-physics/root: Fix compilation with USE="mysql" wrt bug #523996; fix die_compiler message sync with gx86 net-libs/xrootd: version bump and fix bug 521496 travis.yml: use newer portage version fixed bash-comp (bug #526320) version bump
| * sci-chemistry/freeon: Drop obsolete versionsJustin Lecher2014-10-261-0/+3
| | | | | | | | Package-Manager: portage-2.2.14
| * Merge remote-tracking branch 'github/master'Justin Lecher2014-10-26118-313/+3366
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * github/master: (66 commits) sci-physics/root: Fix compilation with USE="mysql" wrt bug #523996; fix die_compiler message sync with gx86 net-libs/xrootd: version bump and fix bug 521496 travis.yml: use newer portage version fixed bash-comp (bug #526320) version bump sci-chemistry/pymol: Patch included upstream sci-chemistry/pymol: Fix broken plugin listing dev-python/ccdproc: Version bump to 0.2.1 Thanks to kiwifb for reporting https://github.com/gentoo-science/sci/issues/280 - Fix openblas: discrepancy between installed libraries and .pc file. Thanks to kiwifb for reporting https://github.com/gentoo-science/sci/issues/280 - Fix openblas: discrepancy between installed libraries and .pc file. sci-chemistry/pymol: Fix upstream buildsystem The fix for Bug 524612 failed in src_install building openblas from git. The fix is to move applying the patch to src_compile after building the library, then remove config.h and config_last.h; make config.h - ignoring the spurious warning; then cp config.h to config_last.h. Fix Bug 524612 - [science overlay] sci-libs/openblas-0.2.11 - Assembler messages: ../kernel/x86_64/gemm_kernel_8x4_barcelona.S:451: Error: missing ')', thanks to Juergen Rose, Jean-Francis Roy and Steven Trogdon for reporting. The problem was that applying the -0.2.11-openblas_config_header_same_between_ABIs.patch patch in src_prepare() causes build failures on assembler code as the assembler does not understand sizeof(float). So delay applying the patch until src_install(). Bump openblas to 0.2.12. dev-python/ccdproc: Version bump to 0.2.1 dev-cpp/eigen: version bump sci-chemistry/pymol: Import tree changes version bump sys-cluster/openmpi: bump sys-cluster/openmpi: bump ...
| | * sci-physics/root: Fix compilation with USE="mysql" wrt bug #523996; fix ↵Matthias Maier2014-10-255-8/+21
| | | | | | | | | | | | | | | | | | die_compiler message Package-Manager: portage-2.2.8-r2
| | * sync with gx86Christoph Junghans2014-10-242-0/+4
| | | | | | | | | | | | Package-Manager: portage-2.2.8-r2
| | * net-libs/xrootd: version bump and fix bug 521496Andrew Savchenko2014-10-2511-0/+406
| | | | | | | | | | | | | | | | | | 1. Version bump of xrootd to 4.0.4. 2. Remove -Werror from CXXFLAGS. While it doesn't cause problem in my case, it may cause them for other users with other CXXFLAGS.
| | * travis.yml: use newer portage versionChristoph Junghans2014-10-231-5/+5
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| | * Merge branch 'master' of ssh://github.com/gentoo-science/sciChristoph Junghans2014-10-234-1/+210
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| | | * Merge branch 'bump_trilinos'Matthias Maier2014-10-224-1/+210
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| | | | * version bumpMatthias Maier2014-10-224-1/+210
| | | |/ | | | | | | | | | | | | Package-Manager: portage-2.2.8-r2
| | * / fixed bash-comp (bug #526320)Christoph Junghans2014-10-232-1/+8
| | |/ | | | | | | | | | Package-Manager: portage-2.2.8-r2
| * | Moved to treeJustin Lecher2014-10-2613-734/+0
| | | | | | | | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* | | Drop liver versionJustin Lecher2014-10-275-238/+0
| |/ |/| | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* | sci-chemistry/pymol: Patch included upstreamJustin Lecher2014-10-212-5/+3
| | | | | | | | Package-Manager: portage-2.2.14
* | Merge remote-tracking branch 'github/master'Justin Lecher2014-10-200-0/+0
|\ \ | | | | | | | | | | | | | | | * github/master: Thanks to kiwifb for reporting https://github.com/gentoo-science/sci/issues/280 - Fix openblas: discrepancy between installed libraries and .pc file. dev-python/ccdproc: Version bump to 0.2.1
| * | Thanks to kiwifb for reporting ↵gienah2014-10-202-1/+13
| | | | | | | | | | | | https://github.com/gentoo-science/sci/issues/280 - Fix openblas: discrepancy between installed libraries and .pc file.
| * | Merge pull request #279 from sargas/ccdproc-0.2.1Justin2014-10-203-5/+64
| |\ \ | | | | | | | | dev-python/ccdproc: Version bump to 0.2.1
| | * | dev-python/ccdproc: Version bump to 0.2.1Joseph Jon Booker2014-10-183-5/+64
| | | | | | | | | | | | | | | | Package-Manager: portage-2.2.14_rc1
* | | | sci-chemistry/pymol: Fix broken plugin listingJustin Lecher2014-10-203-0/+22
| | | | | | | | | | | | | | | | Package-Manager: portage-2.2.14
* | | | dev-python/ccdproc: Version bump to 0.2.1Joseph Jon Booker2014-10-203-5/+64
| | | | | | | | | | | | | | | | Package-Manager: portage-2.2.14_rc1
* | | | Thanks to kiwifb for reporting ↵gienah2014-10-202-1/+13
|/ / / | | | | | | | | | https://github.com/gentoo-science/sci/issues/280 - Fix openblas: discrepancy between installed libraries and .pc file.
* | | sci-chemistry/pymol: Fix upstream buildsystemJustin Lecher2014-10-203-0/+23
| | | | | | | | | | | | Package-Manager: portage-2.2.14_rc1
* | | The fix for Bug 524612 failed in src_install building openblas from git. The ↵gienah2014-10-192-6/+16
| | | | | | | | | | | | fix is to move applying the patch to src_compile after building the library, then remove config.h and config_last.h; make config.h - ignoring the spurious warning; then cp config.h to config_last.h.
* | | Fix Bug 524612 - [science overlay] sci-libs/openblas-0.2.11 - Assembler ↵gienah2014-10-194-2/+22
|/ / | | | | | | messages: ../kernel/x86_64/gemm_kernel_8x4_barcelona.S:451: Error: missing ')', thanks to Juergen Rose, Jean-Francis Roy and Steven Trogdon for reporting. The problem was that applying the -0.2.11-openblas_config_header_same_between_ABIs.patch patch in src_prepare() causes build failures on assembler code as the assembler does not understand sizeof(float). So delay applying the patch until src_install(). Bump openblas to 0.2.12.
* | Merge pull request #277 from gentoo-science/int64-build-eclassMark Wright2014-10-1920-275/+949
|\ \ | | | | | | Int64 build eclass
| * \ Merge int64-eclass branch with master. lapack-reference-9999 builds and ↵gienah2014-10-1829-92/+650
| |\ \ | |/ / |/| | | | | passes tests with USE=int64 xblas.
* | | dev-cpp/eigen: version bumpJauhien Piatlicki2014-10-183-0/+8
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* | | sci-chemistry/pymol: Import tree changesJustin Lecher2014-10-172-2/+7
| | | | | | | | | | | | Package-Manager: portage-2.2.14_rc1
* | | Merge branch 'master' of ssh://github.com/gentoo-science/sciChristoph Junghans2014-10-1616-90/+308
|\ \ \
| * | | sys-cluster/openmpi: bumpJustin Bronder2014-10-153-0/+173
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| * | | fix p4est dependency; drop oldMatthias Maier2014-10-145-4/+283
| | | | | | | | | | | | | | | | Package-Manager: portage-2.2.8-r2
| * | | Merge pull request #278 from tamiko/bump_p4estMatthias Maier2014-10-1411-86/+25
| |\ \ \ | | | | | | | | | | Bump sci-libs/libsc and sci-libs/p4est
| | * | | sci-libs/p4est: Fix build dependenciesMatthias Maier2014-10-142-1/+5
| | | | | | | | | | | | | | | | | | | | Package-Manager: portage-2.2.8-r2
| | * | | sci-libs/p4est: Version bump; update metadata.xmlMatthias Maier2014-10-145-3/+11
| | | | | | | | | | | | | | | | | | | | Package-Manager: portage-2.2.8-r2
| | * | | sci-libs/libsc: Drop old; version bump; update metadata.xmlMatthias Maier2014-10-146-82/+9
| |/ / / | | | | | | | | | | | | Package-Manager: portage-2.2.8-r2
* | | | version bumpChristoph Junghans2014-10-165-0/+154
| | | | | | | | | | | | | | | | Package-Manager: portage-2.2.8-r2
* | | | sys-cluster/openmpi: bumpJustin Bronder2014-10-153-0/+173
|/ / /
* | | Fix support for xblas, it is only available for 32bit integers.François Bissey2014-10-131-8/+8
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| * | Thanks to jlec for reviewing, add missing documentation for EBASE_PROFNAME ↵gienah2014-10-141-1/+13
| | | | | | | | | | | | in fortran-int64.eclass.
| * | Thanks to kiwifb for reviewing and the fix: change ROOT to EROOT to support ↵gienah2014-10-142-1/+5
| | | | | | | | | | | | Gentoo prefix.
| * | Thanks to tamiko for testing - the earlier fix for xblas, ↵gienah2014-10-142-3/+9
| | | | | | | | | | | | -DXBLAS_LIBRARY:FILEPATH="${ROOT}usr/$(get_libdir)/lib${xblas_libname}.so", breaks the build with USE=-xblas, so only do this when use xblas.
| * | Thanks to tamiko for testing and the fix to the problem: sci-libs/xblas is ↵gienah2014-10-142-1/+7
| | | | | | | | | | | | missing sys-devel/m4 as build time dependency (at least the configure script checks for it and barfs).