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* sci-astronomy/eye: drop live only dead packageAisha Tammy2020-09-272-53/+0
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* sci-astronomy/galfit-bin: drop dead packageAisha Tammy2020-09-273-61/+0
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* sci-astronomy/lephare: drop dead packageAisha Tammy2020-09-273-76/+0
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* sci-astronomy/zpeg: drop dead packageAisha Tammy2020-09-273-80/+0
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* sci-astronomy/zebra: drop dead packageAisha Tammy2020-09-273-68/+0
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* sci-biology/fgap-bin: removed discontinued packageHorea Christian2020-09-273-50/+0
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/fgap: removed discontinued packageHorea Christian2020-09-273-41/+0
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/psychopy: removed package with missing depHorea Christian2020-09-273-61/+0
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr@chymera.eu>
* media-libs/avbin-bin: removed deprecated packageHorea Christian2020-09-273-43/+0
| | | | | | | https://github.com/gentoo/sci/issues/663 Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/samri: version bump 0.5Horea Christian2020-09-272-0/+72
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/artemis: remove unmaintained packageHorea Christian2020-09-273-84/+0
| | | | | | | | Package is not discontinued upstream, but would need a major overhaul from present live ebuild: https://github.com/sanger-pathogens/Artemis Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/ampliconnoise: removed discontinued packageHorea Christian2020-09-273-58/+0
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/lastz: updated KEYWORDSHorea Christian2020-09-271-2/+2
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/samri: PYTHON_COMPAT and live ebuild updateHorea Christian2020-09-272-20/+15
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/poretools: removed discontinued packageHorea Christian2020-09-273-40/+0
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/oncotator: rm discontinued package, now part of sci-biology/gatkHorea Christian2020-09-273-52/+0
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/ngs_backbone: removed discontinued packageHorea Christian2020-09-274-309/+0
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/barrnap: version bump 0.9Horea Christian2020-09-273-46/+5
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/nesoni: removed package with deprecated depHorea Christian2020-09-273-45/+0
| | | | | | | | sci-biology/shrimp is dead upstream and will be pulled from ::gentoo https://bugs.gentoo.org/735440 Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/metaseq: removed discontinued packageHorea Christian2020-09-273-47/+0
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/gffutils: version bump 0.10.1, test and PYTHON_COMPAT fixHorea Christian2020-09-273-3/+44
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/pybedtools: PYTHON_COMPAT update and actually install filesHorea Christian2020-09-271-5/+12
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/pyfaidx: version bump 0.5.9.1Horea Christian2020-09-272-5/+9
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/discrover: removed deprecated packageHorea Christian2020-09-274-186/+0
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/nistats: removed deprecated packageHorea Christian2020-09-272-49/+0
| | | | | | | | nistats functionality will be integrated into >=sci-biology/nilearn-0.7: https://github.com/nilearn/nistats#nistats-is-being-retired Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nipy: removed KEYWORDS to match dev-python/provHorea Christian2020-09-272-2/+2
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/dcmstack: added tests, PYTHON_COMPAT updateHorea Christian2020-09-261-4/+5
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nibabel: removed old version, PYTHON_COMPAT updateHorea Christian2020-09-265-56/+8
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/pydicom: rm old, live versions; updated PYTHON_COMPATHorea Christian2020-09-265-41/+3
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-mathematics/aribas: drop dead packageAisha Tammy2020-09-264-93/+0
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* sci-mathematics/apron: drop dead packageAisha Tammy2020-09-263-90/+0
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* dev-python/numba: fix use flag checksAisha Tammy2020-09-261-6/+4
| | | | | | | found when doing compilations without tbb Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* dev-python/pynndescent: nearest neighbours in pythonAisha Tammy2020-09-263-0/+43
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* sci-chemistry/mgltools: drop packageAisha Tammy2020-09-263-56/+0
| | | | | | | | if someone wants to readd, theres ALOT of work to be done Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* sci-chemistry/mgltools-*: drop all subpackagesAisha Tammy2020-09-2691-1863/+0
| | | | | | | debating if i should keep the top one Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* sci-libs/gotoblas2: drop dead packageAisha Tammy2020-09-267-244/+0
| | | | | | | suggested replacement - openblas (direct successor) Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* dev-libs/optix: Add optix v7.{1.0,0.0}Aisha Tammy2020-09-264-0/+79
| | | | | | | | | | | | | Blender utilizes optix as an alternative to CUDA to utilize the raytracing cores in the RTX series of video cards. version 7.0 has been tested with Blender 2.8.4. Closes: https://github.com/gentoo/sci/pull/972 Package-Manager: Portage-3.0.4, Repoman-3.0.1 Signed-off-by: Richard F. Ostrow Jr <rich@warfaresdl.com> Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* sys-cluster/modules: actually upload the fixed testsAisha Tammy2020-09-261-2/+16
| | | | | | | also add python3_9 compat Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* sys-cluster/modules: version bump + new maintainerAisha Tammy2020-09-2615-577/+78
| | | | | | | Closes: https://github.com/gentoo/sci/pull/952 Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* sci-libs/ensmallen: fast numerical libraryAisha Tammy2020-09-263-0/+44
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* sci-libs/tensorflow: drop packageAisha Tammy2020-09-266-402/+0
| | | | | | | | present in ::gentoo (recommended additions - pointy stick in eye) Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* sci-electronics/tnt: drop dead packageAisha Tammy2020-09-2611-1215/+0
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* sci-electronics/stage: drop dead packageAisha Tammy2020-09-264-84/+0
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* sci-electronics/player: drop dead packageAisha Tammy2020-09-263-144/+0
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* sci-electronics/minipro: version bumpAisha Tammy2020-09-263-26/+25
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* sci-chemistry/chooch: drop dead packageAisha Tammy2020-09-266-148/+0
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* sci-chemistry/acpyp: drop dead packageAisha Tammy2020-09-263-42/+0
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* sci-chemistry/ambertools: drop dead packageAisha Tammy2020-09-2614-4531/+0
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* sys-cluster/Lmod: environment module systemAisha Tammy2020-09-263-0/+128
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
* dev-util/Hermes: add env.d file and remove symliksAisha Tammy2020-09-262-3/+3
| | | | | Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo@aisha.cc>