| Commit message (Collapse) | Author | Age | Files | Lines |
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Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Package-Manager: Portage-2.3.6, Repoman-2.3.2
Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Package-Manager: Portage-2.3.6, Repoman-2.3.2
Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Package-Manager: Portage-2.3.6, Repoman-2.3.2
Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Package-Manager: Portage-2.3.6, Repoman-2.3.2
Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Package-Manager: Portage-2.3.6, Repoman-2.3.2
Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Package-Manager: Portage-2.3.6, Repoman-2.3.2
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Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Following new owncloud-client version.
Package-Manager: Portage-2.3.5, Repoman-2.3.2
Closes: https://github.com/gentoo/sci/pull/788
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The package is actually a bundle of many, including SOAPdenovo2 somewhat patched so that it
compiles (unlike vanilla 2.04-r240).
Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Will need to bring in Debian med patches from git://anonscm.debian.org/debian-med/soapdenovo2.git
Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Does not respect CFLAGS, compile fails
Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Package-Manager: Portage-2.3.5, Repoman-2.3.2
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This tarball really doe snot need yaggo for building. See
for whole discussion: https://github.com/gmarcais/Jellyfish/issues/87
Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Package-Manager: Portage-2.3.5, Repoman-2.3.2
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https://github.com/gmarcais/yaggo/issues/7
Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Upstream says SPAdes uses bundled while modified local copy.
Fix URL to new official site.
Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Use patch from https://github.com/Homebrew/homebrew-science/pull/5616
The package install its own *.py files outside of PYTHON's site-packages/.
The "make install" procedure is flakey shellscript and there is no setup.py so we could
reuse common infrastructure for pythonic packages.
There are plenty of bundled 3rd-party apps, some of them compiling statically.
Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Fixes gentoo/sci#786
Package-Manager: Portage-2.3.5, Repoman-2.3.2
Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Fixes gentoo/sci#707
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=601170
Package-Manager: Portage-2.3.5, Repoman-2.3.2
Signed-off-by: Justin Lecher <jlec@gentoo.org>
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now same as upstream and downstream
Closes: https://github.com/gentoo/sci/pull/785
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Closes: https://github.com/gentoo/sci/pull/785
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Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Package-Manager: Portage-2.3.3, Repoman-2.3.1
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The src_install() part does not re-introduce the *.sh and *.py file extensions
like previous -299 ebuild.
Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Supposedly stacks would not work with htslib-1.4 which provides libhtslib.so.2
Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Compiles its own static build of htslib-1.4
Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Compiles fine against htslib-1.4 but because htslib-1.4 is not KEYWORDed
keeping samtools-1.4 masked as well.
Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Package-Manager: Portage-2.3.5, Repoman-2.3.2
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@soap: Keeping empty KEYWORDS
Package-Manager: Portage-2.3.5, Repoman-2.3.2
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Package-Manager: Portage-2.3.5, Repoman-2.3.2
Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Signed-off-by: Justin Lecher <jlec@gentoo.org>
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Package-Manager: Portage-2.3.5, Repoman-2.3.2
Signed-off-by: Justin Lecher <jlec@gentoo.org>
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