Commit message (Collapse) | Author | Age | Files | Lines | |
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* | sci-biology/trf-bin: Fix repoman warnings | Justin Lecher | 2017-11-18 | 1 | -3/+4 |
| | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
* | sci-biology/trf: Fix repoman warnings | Justin Lecher | 2017-11-18 | 1 | -5/+3 |
| | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
* | sci-biology/tmhmm: Fix repoman warnings | Justin Lecher | 2017-11-18 | 2 | -4/+7 |
| | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
* | sci-biology/sequin: Fix repoman warnings | Justin Lecher | 2017-11-18 | 1 | -4/+5 |
| | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> Package-Manager: Portage-2.3.14, Repoman-2.3.6 | ||||
* | sci-biology/repeatmasker: Fix repoman warnings | Justin Lecher | 2017-11-18 | 1 | -7/+6 |
| | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> Package-Manager: Portage-2.3.14, Repoman-2.3.6 | ||||
* | sci-biology/fsl: Fix repoman warnings | Justin Lecher | 2017-11-18 | 2 | -5/+5 |
| | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> Package-Manager: Portage-2.3.14, Repoman-2.3.6 | ||||
* | dev-util/nvidia-cuda-gdk: Fix repoman warnings | Justin Lecher | 2017-11-18 | 2 | -11/+7 |
| | | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> Package-Manager: Portage-2.3.14, Repoman-2.3.6 Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
* | dev-util/f90cache: Fix repoman warnings | Justin Lecher | 2017-11-18 | 5 | -115/+2 |
| | | | | | | | * Drop old Signed-off-by: Justin Lecher <jlec@gentoo.org> Package-Manager: Portage-2.3.14, Repoman-2.3.6 | ||||
* | dev-lang/pgi: Bump to EAPI 6 | Justin Lecher | 2017-11-18 | 2 | -13/+11 |
| | | | | | | | | * Fix repoman warnings Signed-off-by: Justin Lecher <jlec@gentoo.org> Package-Manager: Portage-2.3.14, Repoman-2.3.6 Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
* | sci-visualization/mantid: Dropped due to missing dependency | Justin Lecher | 2017-11-18 | 4 | -156/+0 |
| | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
* | sci-physics/clip: Dropped due to missing dependency | Justin Lecher | 2017-11-18 | 3 | -52/+0 |
| | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
* | sci-chemistry/specView: Dropped due to missing dependency | Justin Lecher | 2017-11-18 | 7 | -370/+0 |
| | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
* | sci-chemistry/redcat: Drop due to unmet dependency | Justin Lecher | 2017-11-18 | 4 | -88/+0 |
| | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
* | sci-chemistry/chemBuild: Dropped due to unmet dependencies | Justin Lecher | 2017-11-18 | 6 | -188/+0 |
| | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
* | dev-util/smartgit: Drop outdated version due to unmet dependency | Justin Lecher | 2017-11-18 | 3 | -62/+0 |
| | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
* | Drop keyqords due to unmet dependecy | Justin Lecher | 2017-11-18 | 2 | -2/+2 |
| | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
* | Bump portage version for travis | Justin Lecher | 2017-11-18 | 1 | -1/+1 |
| | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
* | sci-biology/HTSeq: In main tree | David Seifert | 2017-11-16 | 3 | -39/+0 |
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* | sci-biology/STAR: In main tree | David Seifert | 2017-11-16 | 2 | -38/+0 |
| | | | | Package-Manager: Portage-2.3.14, Repoman-2.3.6 | ||||
* | sci-biology/lastz: fix long-lasting ebuild errors and version bump | Martin Mokrejš | 2017-11-16 | 3 | -8/+27 |
| | | | | | | | | Seems Gentoo newer compiled/installed the lastz_32 binary, which allows indexing larger genomes. This ebuild fixes that for current version and contains practically same Makefile-related patch as before. Package-Manager: Portage-2.3.13, Repoman-2.3.3 | ||||
* | sci-biology/gbench: add missing SLOT | Martin Mokrejš | 2017-11-16 | 1 | -1/+1 |
| | | | | Package-Manager: Portage-2.3.13, Repoman-2.3.3 | ||||
* | sci-biology/gffutils: add missing DEPEND on dev-python/argcomplete | Martin Mokrejš | 2017-11-16 | 1 | -1/+2 |
| | | | | Package-Manager: Portage-2.3.13, Repoman-2.3.3 | ||||
* | sci-biology/gffutils: add missing DEPEND on dev-python/argh | Martin Mokrejš | 2017-11-16 | 1 | -1/+2 |
| | | | | Package-Manager: Portage-2.3.13, Repoman-2.3.3 | ||||
* | sci-biology/gffutils: add missing DEPEND on dev-python/simplejson | Martin Mokrejš | 2017-11-16 | 1 | -1/+3 |
| | | | | Package-Manager: Portage-2.3.13, Repoman-2.3.3 | ||||
* | sci-biology/bamtools: Remove, everything in main tree | David Seifert | 2017-11-02 | 4 | -93/+0 |
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* | Update travis checks to latest portage version | Justin Lecher | 2017-10-30 | 1 | -1/+1 |
| | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
* | sys-cluster/htcondor: Remove optional dep on net-libs/qmf | David Seifert | 2017-10-15 | 3 | -29/+21 |
| | | | | Package-Manager: Portage-2.3.11, Repoman-2.3.3 | ||||
* | profiles: remove use.local.desc permanently | David Seifert | 2017-10-15 | 2 | -402/+8 |
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* | profiles: update use.local.desc for sci-libs/dealii flags | David Seifert | 2017-10-14 | 1 | -0/+3 |
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* | sci-libs/dealii: update live ebuild | Matthias Maier | 2017-10-07 | 2 | -3/+13 |
| | | | | Package-Manager: Portage-2.3.8, Repoman-2.3.3 | ||||
* | sci-mathematics/petsc: fix build on knem setups | Andrew Savchenko | 2017-10-03 | 1 | -0/+2 |
| | | | | | | | If host MPI is configured to use knem, petsc needs to access /dev/knem as well. Package-Manager: Portage-2.3.8, Repoman-2.3.3 Signed-off-by: Andrew Savchenko <bircoph@gentoo.org> | ||||
* | sci-mathematics/petsc: fix superlu version requirement | Andrew Savchenko | 2017-10-03 | 1 | -1/+1 |
| | | | | | | | | | >=sci-libs/superlu-5 is required, see https://lists.debian.org/debian-science/2016/05/msg00059.html This also happens at our local Gentoo HPC setup. Package-Manager: Portage-2.3.8, Repoman-2.3.3 Signed-off-by: Andrew Savchenko <bircoph@gentoo.org> | ||||
* | sci-libs/gsl: bump to gsl-2.4. | François Bissey | 2017-09-23 | 5 | -4/+83 |
| | | | | | | | | | Change over to https in all ebuilds to keep repoman happy. Closes: https://github.com/gentoo/sci/pull/815 Closes: https://github.com/gentoo/sci/issues/813 Package-Manager: Portage-2.3.8, Repoman-2.3.3 | ||||
* | sys-cluster/openmpi: bump 2.1.2 | Justin Bronder | 2017-09-22 | 2 | -4/+1 |
| | | | | Package-Manager: Portage-2.3.6, Repoman-2.3.1 | ||||
* | sci-visualization/mricrogl: version bump. | Horea Christian | 2017-09-21 | 2 | -0/+42 |
| | | | | | Closes: https://github.com/gentoo/sci/pull/798 Package-Manager: Portage-2.3.6, Repoman-2.3.2 | ||||
* | sci-biology/fsl: version bump. | Horea Christian | 2017-09-21 | 6 | -1/+732 |
| | | | | | | | made env.dfile prefix-compatible Closes: https://github.com/gentoo/sci/pull/804 Package-Manager: Portage-2.3.8, Repoman-2.3.3 | ||||
* | sci-mathematics/dolfin and reverse deps: fix PYTHON_COMPAT | Matthias Maier | 2017-09-14 | 6 | -6/+6 |
| | | | | Signed-off-by: Matthias Maier <tamiko@gentoo.org> | ||||
* | sci-mathematics/dolfin: fix patch name | Matthias Maier | 2017-09-14 | 1 | -1/+1 |
| | | | | Package-Manager: Portage-2.3.6, Repoman-2.3.3 | ||||
* | sci-mathematics/dolfin: version bump to 2017.1.0 | Matthias Maier | 2017-09-14 | 2 | -0/+81 |
| | | | | Package-Manager: Portage-2.3.6, Repoman-2.3.3 | ||||
* | dev-python/dijitso: version bump to 2017.1.0 | Matthias Maier | 2017-09-14 | 2 | -0/+20 |
| | | | | Package-Manager: Portage-2.3.6, Repoman-2.3.3 | ||||
* | dev-python/ffc: version bump to 2017.1.0 | Matthias Maier | 2017-09-14 | 2 | -0/+26 |
| | | | | Package-Manager: Portage-2.3.6, Repoman-2.3.3 | ||||
* | dev-python/fiat: version bump to 2017.1.0 | Matthias Maier | 2017-09-14 | 2 | -0/+23 |
| | | | | Package-Manager: Portage-2.3.6, Repoman-2.3.3 | ||||
* | dev-python/instant: version bump to 2017.1.0 | Matthias Maier | 2017-09-14 | 2 | -0/+21 |
| | | | | Package-Manager: Portage-2.3.6, Repoman-2.3.3 | ||||
* | dev-python/ufl: version bump to 2017.1.0 | Matthias Maier | 2017-09-14 | 2 | -0/+24 |
| | | | | Package-Manager: Portage-2.3.6, Repoman-2.3.3 | ||||
* | profiles: update use.local.desc for sci-libs/dealii flags | David Seifert | 2017-09-07 | 1 | -0/+2 |
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* | sci-biology/TransDecoder: Remove old | David Seifert | 2017-09-07 | 3 | -105/+0 |
| | | | | Package-Manager: Portage-2.3.8, Repoman-2.3.3 | ||||
* | sci-biology/TransDecoder: Fix double-prefix | David Seifert | 2017-09-07 | 2 | -41/+31 |
| | | | | | Closes: https://bugs.gentoo.org/show_bug.cgi?id=587702 Package-Manager: Portage-2.3.8, Repoman-2.3.3 | ||||
* | sci-biology/pairagon: Fix double-prefix | David Seifert | 2017-09-07 | 1 | -17/+20 |
| | | | | | Closes: https://bugs.gentoo.org/show_bug.cgi?id=587702 Package-Manager: Portage-2.3.8, Repoman-2.3.3 | ||||
* | sci-biology/imagej: Do not call external programs in global scope | David Seifert | 2017-09-07 | 1 | -1/+1 |
| | | | | | Closes: https://bugs.gentoo.org/show_bug.cgi?id=630214 Package-Manager: Portage-2.3.8, Repoman-2.3.3 | ||||
* | sci-libs/htslib: Remove old | David Seifert | 2017-09-02 | 5 | -103/+0 |
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