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* sci-libs/dealii: port to EAPI 6Matthias Maier2017-04-072-46/+46
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.2
* sci-libs/dealii: version bump to 8.5.0Matthias Maier2017-04-072-0/+128
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.2
* sci-mathematics/dolfin: Add dev-python/dijitso dependencyMatthias Maier2017-04-071-0/+1
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.2
* dev-python/dijitso: initial commitMatthias Maier2017-04-073-0/+38
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.2
* sci-mathematics/dolfin: fix runtime dependency on swigMatthias Maier2017-04-071-4/+5
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.2
* sci-mathematics/dolfin: ebuild maintenanceMatthias Maier2017-04-072-7/+14
| | | | | | | | - add use flag descriptions to metadata - fix automagic dependencies - fix repoman warnings Package-Manager: Portage-2.3.3, Repoman-2.3.2
* sci-mathematics/dolfin: version bump to 2016.2.0Matthias Maier2017-04-063-0/+97
| | | | | | Further, bump to EAPI 6 and add dependencies Package-Manager: Portage-2.3.3, Repoman-2.3.2
* fixup fiatMatthias Maier2017-04-061-1/+0
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* dev-python/ffc: version bump to 2016.2.0Matthias Maier2017-04-062-0/+26
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.2
* dev-python/fiat: version bump to 2016.2.0Matthias Maier2017-04-062-0/+24
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.2
* dev-python/instant: drop oldMatthias Maier2017-04-063-39/+0
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.2
* dev-python/instant: version bump to 2016.2.0Matthias Maier2017-04-062-0/+21
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.2
* dev-python/ufl: version bump to 2016.2.0Matthias Maier2017-04-062-0/+24
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.2
* dev-python/matplotlib2tikz: Adopt changes from main treeMarius Brehler2017-04-032-16/+17
| | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* Merge remote-tracking branch 'github/master'Marius Brehler2017-04-037-13/+144
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| * sci-visualization/mricrogl: corrected library installation (#768)Horea Christian2017-04-011-1/+1
| | | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2
| * sci-visualization/surf-ice: corrected library installation (#767)Horea Christian2017-04-011-1/+1
| | | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2
| * sci-visualization/mricrogl: more appropriate path for application libraries ↵Horea Christian2017-03-311-4/+6
| | | | | | | | | | (#765) Package-Manager: Portage-2.3.4, Repoman-2.3.2
| * net-misc/cernbox-client: Bump to 2.3.1 release, (#764)olifre2017-03-312-0/+104
| | | | | | | | | | following owncloud-client. Package-Manager: Portage-2.3.5, Repoman-2.3.2
| * sci-visualization/surf-ice: added proper app data install paths (#766)Horea Christian2017-03-312-7/+4
| | | | | | | | | | | | | | | | | | | | * sci-visualization/surf-ice: added proper lib install paths Package-Manager: Portage-2.3.4, Repoman-2.3.2 * sci-visualization/surf-ice: corrected executable name for GNOME launcer Package-Manager: Portage-2.3.4, Repoman-2.3.2
| * sci-biology/nilearn: importing system joblib (#762)Horea Christian2017-03-272-2/+30
| | | | | | | | | | | | | | | | | | | | * sci-biology/nilearn: importing system joblib Package-Manager: Portage-2.3.4, Repoman-2.3.2 * sci-biology/nilearn: declaring local variable Package-Manager: Portage-2.3.4, Repoman-2.3.2
* | sci-libs/openblas: advise openmp cflags in pkg-config.Benda Xu2017-04-021-0/+1
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* | dev-python/pyBigWig: fix pythonic installationMartin Mokrejš2017-04-012-1/+9
| | | | | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.1
* | sci-biology/libBigWig: manually pass DESTDIR variableMartin Mokrejš2017-03-312-0/+8
| | | | | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.1
* | sci-biology/libBigWig: respect DESTDIRMartin Mokrejš2017-03-312-2/+12
| | | | | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.1
* | sci-libs/lib2bit: improve ebuild to respect into /usrMartin Mokrejš2017-03-312-4/+11
| | | | | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.1
* | sci-biology/plinkseq: we cannot zap bundled mongoose so easilyMartin Mokrejš2017-03-311-5/+8
| | | | | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.1
* | dev-python/pyBigWig: add live ebuildMartin Mokrejš2017-03-311-0/+18
| | | | | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.1
* | sci-biology/deeptools: add new packageMartin Mokrejš2017-03-314-0/+77
| | | | | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.1
* | dev-python/pyBigWig: add python wrapperMartin Mokrejš2017-03-313-0/+29
| | | | | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.1
* | Revert "sci-biology/deeptools: add a new package"Martin Mokrejš2017-03-3111-229/+6
| | | | | | | | This reverts commit 81a1355ea065924e0c6426772af7c16d90432ccd.
* | sci-biology/deeptools: add a new packageMartin Mokrejš2017-03-3111-6/+229
| | | | | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.1
* | sci-biology/libBigWig: ebuild cleanup, add last released versionMartin Mokrejš2017-03-314-0/+47
| | | | | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.1
* | dev-python/py2bit: add a new wrapper to be used by sci-biology/deeptoolsMartin Mokrejš2017-03-313-0/+33
| | | | | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.1
* | sci-libs/lib2bit: add a new library to be eventually used through ↵Martin Mokrejš2017-03-314-0/+48
| | | | | | | | | | | | dev-pyton/py2bit Package-Manager: Portage-2.3.5, Repoman-2.3.1
* | sci-biology/ncbi-tools++: avoid file collision, KEYWORDS added backMartin Mokrejš2017-03-271-2/+2
| | | | | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.1
* | sci-biology/ncbi-tools++: compiles via 'make -j1' nowMartin Mokrejš2017-03-272-0/+29
| | | | | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.1
* | sci-biology/ncbi-tools++: and moreMartin Mokrejš2017-03-273-0/+32
| | | | | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.1
* | sci-biology/ncbi-tools++: fix table2asn linkingMartin Mokrejš2017-03-272-0/+14
| | | | | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.1
* | sci-biology/ncbi-tools++: more fixesMartin Mokrejš2017-03-264-2/+28
|/ | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1
* Merge remote-tracking branch 'github/master'Justin Lecher2017-03-262-0/+91
|\ | | | | | | | | * github/master: dev-util/amdapp: Added release and manifest for new AMD download v3.0.130.136 (#605)
| * dev-util/amdapp: Added release and manifest for new AMD download ↵cengique2017-03-262-0/+91
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | v3.0.130.136 (#605) * dev-util/amdapp: Added release and manifest for new AMD download v3.0.130.136 Updated EAPI and copyright replace cp -r with doins selected media-libs/glew slot 0 as dep Package-Manager: portage-2.2.28 * removed ati-drivers dependendency and forwarded other style changes from 3.0-r1.ebuild Package-Manager: portage-2.2.28 * dev-util/amdapp: BUGFIX for doins installing files in wrong place. doins is only for single files, must use cp -r like the previous ebuild. Package-Manager: Portage-2.3.3, Repoman-2.3.1 * dev-util/amdapp: Changed back to undocumented doins -r, set the executable bits, and removed already-unpacked archive Package-Manager: Portage-2.3.3, Repoman-2.3.1 * dev-util/amdapp: Fixing several small issues asked by jlec and added :* slot to llvm asked by repoman Package-Manager: Portage-2.3.4, Repoman-2.3.1
* | sci-misc/elmer-meta: Fix missing empty line after headerJustin Lecher2017-03-262-4/+6
| | | | | | | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* | sci-biology/hisat2: Properly support pythonJustin Lecher2017-03-261-5/+8
| | | | | | | | | | | | | | Drop stray CVS header line Package-Manager: Portage-2.3.5, Repoman-2.3.2 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* | sci-chemistry/xplor-nih: Drop obsolete ncurses versionJustin Lecher2017-03-261-6/+3
| | | | | | | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* | sci-chemistry/phenix-bin: Drop obsolete ncurses versionJustin Lecher2017-03-263-133/+3
| | | | | | | | | | | | | | Drop old Package-Manager: Portage-2.3.5, Repoman-2.3.2 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* | sci-chemistry/nmrpipe: Drop obsolete ncurses versionJustin Lecher2017-03-262-7/+4
| | | | | | | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* | sci-biology/scbi_zcat: Drop obsolete ruby versionJustin Lecher2017-03-261-4/+6
| | | | | | | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* | sci-biology/scbi_plot: Drop obsolete ruby versionJustin Lecher2017-03-261-4/+6
| | | | | | | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* | sci-biology/scbi_mapreduce: Drop obsolete ruby versionJustin Lecher2017-03-261-4/+6
| | | | | | | | | | Package-Manager: Portage-2.3.5, Repoman-2.3.2 Signed-off-by: Justin Lecher <jlec@gentoo.org>