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* dev-python/bedtools: move from sci-biology, version bump 0.10.0HEADmasterMichael Schubert7 days3-0/+57
| | | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Closes: https://github.com/gentoo/sci/pull/1285 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/pyfaidx: version bump 0.8.1.1Michael Schubert7 days3-0/+38
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/datrie: fix gcc14 compileMichael Schubert2024-07-111-1/+3
| | | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Closes: https://github.com/gentoo/sci/pull/1280 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/snakemake: version bump 8.16.0Michael Schubert2024-07-112-14/+14
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/snakemake-interface-storage-plugins: version bump 3.2.3Michael Schubert2024-07-112-1/+1
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/snakemake-interface-executor-plugins: version bump 9.2.0Michael Schubert2024-07-112-1/+1
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/rich-click: version bump 1.8.3Michael Schubert2024-07-112-3/+3
| | | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Closes: https://github.com/gentoo/sci/pull/1284 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/plac: version bump 1.4.3Michael Schubert2024-07-112-2/+2
| | | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Closes: https://github.com/gentoo/sci/pull/1283 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/dpath: version bump 2.2.0 and add test depsMichael Schubert2024-07-112-2/+9
| | | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Closes: https://github.com/gentoo/sci/pull/1282 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/awkward: add 2.6.6Alexander Puck Neuwirth2024-06-272-0/+45
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* dev-python/awkward-cpp: add 35Alexander Puck Neuwirth2024-06-272-0/+27
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* dev-python/archspec: add 0.2.4, drop 0.2.2, drop 0.1.4Alexander Puck Neuwirth2024-06-273-22/+10
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* dev-python/boost-histogram: add 1.4.1, drop 1.4.0Alexander Puck Neuwirth2024-06-272-1/+2
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* dev-python/sphinxcontrib-napoleon: enable py3.12Andrew Ammerlaan2024-06-191-1/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/snakemake: version 7.32.4 is compat with py3.12Michael Schubert2024-06-192-9/+9
| | | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Closes: https://github.com/gentoo/sci/pull/1278 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/snakemake: add version 8Michael Schubert2024-06-192-0/+75
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/smart-open: py3.12 compat; disable tests (broken in py3.11)Michael Schubert2024-06-191-5/+6
| | | | | | | upstream URL update is automatic forward Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/google-cloud-storage: version bump 2.17.0Michael Schubert2024-06-192-3/+4
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/datrie: py3.12 compatMichael Schubert2024-06-191-1/+1
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/snakemake-storage-plugins: add ebuildMichael Schubert2024-06-193-0/+41
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/snakemake-report-plugins: add ebuildMichael Schubert2024-06-193-0/+38
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/snakemake-executor-plugins: add ebuildMichael Schubert2024-06-193-0/+40
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/snakemake-interface-common: add ebuildMichael Schubert2024-06-193-0/+39
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/immutables: add ebuildMichael Schubert2024-06-193-0/+38
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/conda-inject: add ebuildMichael Schubert2024-06-193-0/+38
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/argparse-dataclass: add ebuildMichael Schubert2024-06-193-0/+36
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/throttler: py3.12 compatMichael Schubert2024-06-191-1/+1
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/stopit: py3.12 compatMichael Schubert2024-06-191-1/+1
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/reretry: py3.12 compatMichael Schubert2024-06-191-1/+1
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/connection_pool: py3.12 compatMichael Schubert2024-06-191-1/+1
| | | | | Signed-off-by: Michael Schubert <mschu.dev@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* */*: drop distutils_enable_tests --installAndrew Ammerlaan2024-06-172-2/+2
| | | | | | TODO: port these packages to pep517, and fix tests Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/vector: add 1.4.1, drop 1.4.0Alexander Puck Neuwirth2024-06-112-1/+1
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* dev-python/hist: add 2.7.3Alexander Puck Neuwirth2024-06-032-0/+27
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* dev-python/fusepy: new package, add 3.0.1Horea Christian2024-05-293-0/+37
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/aiohttp-retry: new package, add 2.8.3Horea Christian2024-05-093-0/+48
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/prov: new package, add 2.0.0Horea Christian2024-05-093-0/+58
| | | | | | | Brought back here after deprecation from ::gentoo, fixed some of the issues with it. Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/methodtools: new package, add 0.4.7Horea Christian2024-05-094-0/+50
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/wirerope: new package, add 0.4.7Horea Christian2024-05-064-0/+53
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/linesep: new package, add 0.5.0Horea Christian2024-05-064-0/+54
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/hist: new package, add 2.7.2Alexander Puck Neuwirth2024-05-063-0/+46
| | | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de> Closes: https://github.com/gentoo/sci/pull/1259
* dev-python/histoprint: new package, add 2.4.0Alexander Puck Neuwirth2024-05-063-0/+40
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* dev-python/vector: add 1.4.0Alexander Puck Neuwirth2024-04-252-0/+35
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* dev-python/MagnetoResistance-tool: enable py3.12Andrew Ammerlaan2024-04-111-1/+1
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/hdmf: version and PYTHON_COMPAT bump, treecleanHorea Christian2024-03-214-62/+3
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/pynwb: add 2.6.0, drop 2.3.2Horea Christian2024-03-212-3/+10
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/docstring-parser: new package, add 0.16Horea Christian2024-03-213-0/+35
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/zarr_checksum: add 0.4.0Horea Christian2024-03-212-0/+27
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/dandi-schema: drop 0.8.3-r1, 0.8.4Horea Christian2024-03-213-86/+0
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/awkward: add missing test dependencyAlexander Puck Neuwirth2024-03-191-0/+1
| | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
* dev-python/awkward: new package, add 2.5.2Alexander Puck Neuwirth2024-03-193-0/+57
| | | | | Closes: https://github.com/gentoo/sci/pull/1257 Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>