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| author |   David Seifert <soap@gentoo.org> | 2016-02-08 22:31:10 +0100 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2016-02-08 22:31:27 +0100 |
| commit | 7debc3735baec3b152ad93cf7b436ed64002705f (patch) | |
| tree | 77568a19e78a501ff8ca8880aa7bc16bfadbd79d /sci-biology | |
| parent | Merge remote-tracking branch 'github/pr/817'. (diff) | |
| download | gentoo-7debc3735baec3b152ad93cf7b436ed64002705f.tar.gz gentoo-7debc3735baec3b152ad93cf7b436ed64002705f.tar.bz2 gentoo-7debc3735baec3b152ad93cf7b436ed64002705f.zip | |
sci-biology/mira: Add missing <sys-devel/flex-2.6.0 dependency
Gentoo-Bug: 574172
* Fix GCC5 explicit conversion of 'nullptr' to 'bool'
* Fix overlong DESCRIPTION
Package-Manager: portage-2.2.27
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/mira/files/mira-4.0.2-cout.patch | 11 | ||||
| -rw-r--r-- | sci-biology/mira/mira-4.0.2.ebuild | 5 |
2 files changed, 14 insertions, 2 deletions
diff --git a/sci-biology/mira/files/mira-4.0.2-cout.patch b/sci-biology/mira/files/mira-4.0.2-cout.patch index 14feb0284c9f..78e7168cb49d 100644 --- a/sci-biology/mira/files/mira-4.0.2-cout.patch +++ b/sci-biology/mira/files/mira-4.0.2-cout.patch @@ -14,3 +14,14 @@ index 47e5ee8..060b6f3 100644 // make the "tcmalloc: large alloc" messages from TCMallom disappear // by setting the reporting environment variable to a very large value // see: http://groups.google.com/group/google-perftools/browse_thread/thread/24a003fc35f3d470?pli=1 +--- a/src/mira/parameters.C ++++ b/src/mira/parameters.C +@@ -2222,7 +2222,7 @@ + MIRANOTIFY(Notify::FATAL, "File not found: " << pfile); + } + +- parse(fin, Pv, nullptr); ++ parse(fin, Pv, false); + + fin.close(); + diff --git a/sci-biology/mira/mira-4.0.2.ebuild b/sci-biology/mira/mira-4.0.2.ebuild index b89246b2304b..9b04aac4a3a6 100644 --- a/sci-biology/mira/mira-4.0.2.ebuild +++ b/sci-biology/mira/mira-4.0.2.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2016 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ @@ -9,7 +9,7 @@ MY_PV="${PV/_}" # convert from mira-4.0_rc2 (Gentoo ebuild filename derived) to inherit autotools eutils multilib -DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Solexa / Illumina" +DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Illumina" HOMEPAGE="http://www.chevreux.org/projects_mira.html" SRC_URI=" http://sourceforge.net/projects/mira-assembler/files/MIRA/stable/"${PN}"-"${MY_PV}".tar.bz2 @@ -28,6 +28,7 @@ CDEPEND=" dev-libs/boost[threads] dev-util/google-perftools" DEPEND="${CDEPEND} + <sys-devel/flex-2.6.0 app-editors/vim-core dev-libs/expat" RDEPEND="${CDEPEND}" |