diff options
| author |   David Seifert <soap@gentoo.org> | 2017-02-26 20:16:40 +0100 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2017-02-26 20:18:38 +0100 |
| commit | d7aab918caf0a3dc9e599a8407df20df8db38d4d (patch) | |
| tree | 33dbd35912c711562f3cf4de956ca8e47fe8edb5 /sci-biology | |
| parent | media-video/parole: Bump to 0.9.1 (bugfix) (diff) | |
| download | gentoo-d7aab918caf0a3dc9e599a8407df20df8db38d4d.tar.gz gentoo-d7aab918caf0a3dc9e599a8407df20df8db38d4d.tar.bz2 gentoo-d7aab918caf0a3dc9e599a8407df20df8db38d4d.zip | |
sci-biology/ariadne: Modernise to EAPI 6
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/ariadne/ariadne-1.3-r3.ebuild | 47 | ||||
| -rw-r--r-- | sci-biology/ariadne/files/ariadne-1.3-gcc4.patch | 4 |
2 files changed, 49 insertions, 2 deletions
diff --git a/sci-biology/ariadne/ariadne-1.3-r3.ebuild b/sci-biology/ariadne/ariadne-1.3-r3.ebuild new file mode 100644 index 000000000000..8be74e1353cb --- /dev/null +++ b/sci-biology/ariadne/ariadne-1.3-r3.ebuild @@ -0,0 +1,47 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +inherit toolchain-funcs + +DESCRIPTION="Protein sequences and profiles comparison" +HOMEPAGE="http://www.well.ox.ac.uk/ariadne/" +SRC_URI="http://www.well.ox.ac.uk/${PN}/${P}.tar.Z" + +LICENSE="ARIADNE" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="static-libs" + +DEPEND=">=sci-biology/ncbi-tools-0.20041020-r1" +RDEPEND="${DEPEND}" + +S=${WORKDIR}/SRC-${PV} + +PATCHES=( + "${FILESDIR}"/${P}-gcc4.patch + "${FILESDIR}"/${P}-implicits.patch +) + +src_prepare() { + default + sed -i -e "s/\$(CFLAGS)/\$(LDFLAGS) &/" Makefile || die #359045 + sed -e "s/blosum62/BLOSUM62/" -i prospero.c || die +} + +src_compile() { + emake CC="$(tc-getCC)" OPTIMISE="${CFLAGS}" +} + +src_install() { + dobin Linux/{ariadne,prospero} + + use static-libs && dolib.a Linux/libseq.a + + insinto /usr/include/${PN} + doins Include/*.h + + einstalldocs +} diff --git a/sci-biology/ariadne/files/ariadne-1.3-gcc4.patch b/sci-biology/ariadne/files/ariadne-1.3-gcc4.patch index 0192efd4db5e..8bda75cb4f3a 100644 --- a/sci-biology/ariadne/files/ariadne-1.3-gcc4.patch +++ b/sci-biology/ariadne/files/ariadne-1.3-gcc4.patch @@ -1,5 +1,5 @@ ---- cl.c.old 2006-09-12 17:13:02.000000000 -0400 -+++ cl.c 2006-09-12 17:13:34.000000000 -0400 +--- a/cl.c ++++ b/cl.c @@ -658,6 +658,7 @@ fclose(fp); if ( ! stat( filename, &buf ) ) |