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| author |   David Seifert <soap@gentoo.org> | 2020-11-01 19:36:08 +0100 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2020-11-01 19:36:08 +0100 |
| commit | ead8097cca9fbc1dffd7c78127325306dfba0104 (patch) | |
| tree | 8edea8d0aaeb03aa682eb7dfc219da72e76035c2 /sci-biology | |
| parent | sci-biology/embassy-phylipnew: Fix -fno-common (diff) | |
| download | gentoo-ead8097cca9fbc1dffd7c78127325306dfba0104.tar.gz gentoo-ead8097cca9fbc1dffd7c78127325306dfba0104.tar.bz2 gentoo-ead8097cca9fbc1dffd7c78127325306dfba0104.zip | |
sci-biology/embassy-phylipnew: Patch out -L/usr/lib for LLD
Closes: https://bugs.gentoo.org/731858
Package-Manager: Portage-3.0.8, Repoman-3.0.2
Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/embassy-phylipnew/files/embassy-phylipnew-3.69.650_fix-build-system.patch | 34 |
1 files changed, 17 insertions, 17 deletions
diff --git a/sci-biology/embassy-phylipnew/files/embassy-phylipnew-3.69.650_fix-build-system.patch b/sci-biology/embassy-phylipnew/files/embassy-phylipnew-3.69.650_fix-build-system.patch index 1cba944094a2..95951e632188 100644 --- a/sci-biology/embassy-phylipnew/files/embassy-phylipnew-3.69.650_fix-build-system.patch +++ b/sci-biology/embassy-phylipnew/files/embassy-phylipnew-3.69.650_fix-build-system.patch @@ -1,13 +1,6 @@ - configure.ac | 49 +++++++------------------------------------------ - emboss_acd/Makefile.am | 2 +- - src/Makefile.am | 7 ++----- - 3 files changed, 10 insertions(+), 48 deletions(-) - -diff --git a/configure.ac b/configure.ac -index e5bfaf1..09ed517 100644 --- a/configure.ac +++ b/configure.ac -@@ -635,33 +635,6 @@ AS_CASE([${host_os}], +@@ -635,33 +635,6 @@ @@ -41,7 +34,7 @@ index e5bfaf1..09ed517 100644 dnl FIXME: This does no longer seem required with Autoconf 2.67? dnl Intel MacOSX 10.6 puts X11 in a non-standard place dnl AS_IF([test "x${with_x}" != "xno"], -@@ -781,21 +754,6 @@ AX_LIB_POSTGRESQL +@@ -781,21 +754,6 @@ @@ -63,7 +56,7 @@ index e5bfaf1..09ed517 100644 dnl Test if --enable-localforce given locallink="no" embprefix="/usr/local" -@@ -918,6 +876,13 @@ AC_ARG_ENABLE([systemlibs], +@@ -918,6 +876,13 @@ AM_CONDITIONAL([ESYSTEMLIBS], [test "x${enable_systemlibs}" = "xyes"]) @@ -77,8 +70,6 @@ index e5bfaf1..09ed517 100644 # Enable the purify tool: --enable-purify, sets CC and LIBTOOL -diff --git a/emboss_acd/Makefile.am b/emboss_acd/Makefile.am -index e1c1878..e253c95 100644 --- a/emboss_acd/Makefile.am +++ b/emboss_acd/Makefile.am @@ -1,3 +1,3 @@ @@ -86,11 +77,9 @@ index e1c1878..e253c95 100644 -pkgdata_DATA = *.acd +pkgdata_DATA = $(srcdir)/*.acd pkgdatadir=$(prefix)/share/EMBOSS/acd -diff --git a/src/Makefile.am b/src/Makefile.am -index 1883ce9..fb1787f 100644 --- a/src/Makefile.am +++ b/src/Makefile.am -@@ -16,10 +16,7 @@ AM_CPPFLAGS = -I../include -I../../../nucleus -I../../../ajax/pcre \ +@@ -16,10 +16,7 @@ -I../../../ajax/ensembl -I../../../ajax/ajaxdb \ -I../../../ajax/acd -I../../../plplot else @@ -102,10 +91,21 @@ index 1883ce9..fb1787f 100644 endif if ISSHARED -@@ -120,5 +117,5 @@ LDADD = ../../../nucleus/libnucleus.la ../../../ajax/acd/libacd.la \ +@@ -34,7 +31,7 @@ + -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre \ + $(NLAIXLIBS) -leplplot + else +-AIX_CFLAGS = -Wl,-bdynamic -Wl,-brtl -L${embprefix}/lib -lnucleus -lacd \ ++AIX_CFLAGS = -Wl,-bdynamic -Wl,-brtl -lnucleus -lacd \ + -lajaxdb -lensembl -lajaxg -lajax -lepcre $(NLAIXLIBS) -leplplot + endif + endif +@@ -119,6 +116,6 @@ + ../../../ajax/pcre/libepcre.la \ ../../../plplot/libeplplot.la $(XLIB) else - LDADD = -L${embprefix}/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg \ +-LDADD = -L${embprefix}/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg \ - -lajax -lepcre $(NLADD) -leplplot $(XLIB) ++LDADD = -lnucleus -lacd -lajaxdb -lensembl -lajaxg \ + -lajax $(NLADD) $(XLIB) endif |