diff options
Diffstat (limited to 'sci-biology/infernal/files')
4 files changed, 24 insertions, 8 deletions
diff --git a/sci-biology/infernal/files/infernal-1.0.2-ldflags.patch b/sci-biology/infernal/files/infernal-1.0.2-ldflags.patch index 5bc5bd008ff6..f688dce152ed 100644 --- a/sci-biology/infernal/files/infernal-1.0.2-ldflags.patch +++ b/sci-biology/infernal/files/infernal-1.0.2-ldflags.patch @@ -2,8 +2,8 @@ Respect LDFLAGS http://bugs.gentoo.org/show_bug.cgi?id=338177 ---- src/Makefile.in -+++ src/Makefile.in +--- a/src/Makefile.in ++++ b/src/Makefile.in @@ -86,7 +86,7 @@ all: $(PROGS) diff --git a/sci-biology/infernal/files/infernal-1.0.2-overflows.patch b/sci-biology/infernal/files/infernal-1.0.2-overflows.patch index b9791fa1ca2e..67190c4c1d42 100644 --- a/sci-biology/infernal/files/infernal-1.0.2-overflows.patch +++ b/sci-biology/infernal/files/infernal-1.0.2-overflows.patch @@ -2,8 +2,8 @@ Fix buffer overflow http://bugs.gentoo.org/show_bug.cgi?id=338179 ---- easel/esl_getopts.c -+++ easel/esl_getopts.c +--- a/easel/esl_getopts.c ++++ b/easel/esl_getopts.c @@ -1270,7 +1270,7 @@ "Arg looks like option? Use %.24s%.24s if you really mean it.", g->opt[opti].name, *ret_optarg); diff --git a/sci-biology/infernal/files/infernal-1.0.2-parallel-build.patch b/sci-biology/infernal/files/infernal-1.0.2-parallel-build.patch index 004742546f00..67ffa6fda7f6 100644 --- a/sci-biology/infernal/files/infernal-1.0.2-parallel-build.patch +++ b/sci-biology/infernal/files/infernal-1.0.2-parallel-build.patch @@ -2,8 +2,8 @@ Fix parallel build http://bugs.gentoo.org/show_bug.cgi?id=311919 ---- Makefile.in -+++ Makefile.in +--- a/Makefile.in ++++ b/Makefile.in @@ -82,9 +82,10 @@ all: core @@ -18,8 +18,8 @@ http://bugs.gentoo.org/show_bug.cgi?id=311919 #.PHONY: $(RIGFILTERS) #$(RIGFILTERS): core ---- easel/Makefile.in -+++ easel/Makefile.in +--- a/easel/Makefile.in ++++ b/easel/Makefile.in @@ -132,7 +132,7 @@ esl_wuss.o diff --git a/sci-biology/infernal/files/infernal-1.0.2-respect-DESTDIR.patch b/sci-biology/infernal/files/infernal-1.0.2-respect-DESTDIR.patch new file mode 100644 index 000000000000..ea465e592ffa --- /dev/null +++ b/sci-biology/infernal/files/infernal-1.0.2-respect-DESTDIR.patch @@ -0,0 +1,16 @@ +Build system does not respect DESTDIR by default. + +--- a/Makefile.in ++++ b/Makefile.in +@@ -203,9 +203,9 @@ + # "make install" installs the programs in BINDIR + # + install: +- mkdir -p ${BINDIR} ++ mkdir -p $(DESTDIR)${BINDIR} + for file in $(PROGS); do\ +- cp src/$$file $(BINDIR)/;\ ++ cp src/$$file $(DESTDIR)$(BINDIR)/;\ + done + # if test -d $(RIGFILTERS); then\ + # for file in $(RFPROGS); do\ |