diff options
Diffstat (limited to 'sci-biology/phred/files/phred-071220-fix-build-system.patch')
-rw-r--r-- | sci-biology/phred/files/phred-071220-fix-build-system.patch | 82 |
1 files changed, 0 insertions, 82 deletions
diff --git a/sci-biology/phred/files/phred-071220-fix-build-system.patch b/sci-biology/phred/files/phred-071220-fix-build-system.patch deleted file mode 100644 index 997f39941a07..000000000000 --- a/sci-biology/phred/files/phred-071220-fix-build-system.patch +++ /dev/null @@ -1,82 +0,0 @@ -* Fix build system to honour CC, CFLAGS, CPPFLAGS and LDFLAGS -* Specify a default target, in order to keep the ebuild slim - ---- a/Makefile -+++ b/Makefile -@@ -12,9 +12,9 @@ - - # UNIX specific definitions (default) - # --CC= cc --CFLAGS= -O -DANSI_C $(LXFLAGS) --CLIB= -lm -+CC ?= cc -+CPPFLAGS += -DANSI_C $(LXFLAGS) -+LIBS += -lm - - # Windows 'nmake' specific definitions - # -@@ -133,9 +133,6 @@ - $(objdir)writeSDF.o \ - $(objdir)writeSeq.o - --SRCS = $(OBJS:.o=.c) --WOBJ = $(OBJS:.o=.obj) -- - INCS = \ - $(incdir)chromatData.h \ - $(incdir)freeChromatData.h \ -@@ -179,48 +176,18 @@ - # UNIX make specific phred target - # note: a horizontal tab character must precede `$(CC)' - # --phred: $(OBJS) -- $(CC) $(CFLAGS) -o phred $(OBJS) $(CLIB) - - --# Windows nmake specific phred target --# --forwindows: $(WOBJ) -- $(CC) $(CFLAGS) /Fephred $(WOBJ) --# $(CC) $(CFLAGS) /Fedaev daev.c -+.PHONY: all -+all: phred daev - - --# test CC: refuse to compile if --# --# o SunOS --# --# AND --# --# o using /usr/ucb/cc compiler --# --# NOTE: this compiler causes problems: see PHRED.DOC --# --test_cc: -- @if [ `uname` = SunOS ] ; \ -- then \ -- if [ `which $(CC)` = "/usr/ucb/cc" ] ; \ -- then \ -- echo ""; \ -- echo "============================================================"; \ -- echo "| |"; \ -- echo "| This SUN C compiler produces a bad phred executable. |"; \ -- echo "| |"; \ -- echo "| Please see the PHRED.DOC file for more information. |"; \ -- echo "| |"; \ -- echo "============================================================"; \ -- echo ""; \ -- exit 1; \ -- fi \ -- fi -+phred: $(OBJS) -+ $(CC) $(LDFLAGS) $(CFLAGS) -o phred $^ $(LIBS) - - - daev: daev.o -- $(CC) $(CFLAGS) -o daev daev.o -lm -+ $(CC) $(LDFLAGS) $(CFLAGS) -o daev $^ $(LIBS) - - - clean: |