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* added TCL patch to modules 3.2.10 ebuildAndreas Schäfer2013-06-262-3/+18
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* clean upChristoph Junghans2013-06-252-13/+15
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* make use of usexChristoph Junghans2013-06-252-32/+22
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* sync with gx86Christoph Junghans2013-06-252-1/+5
| | | | Package-Manager: portage-2.2.0_alpha185
* sys-cluster/charm-6.5.0: Reorganized DEPENDs.Nicolas Bock2013-06-242-5/+8
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* sys-cluster/charm-6.5.0: Added mpi use flag.Nicolas Bock2013-06-242-9/+16
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* app-admin/eselect: Version bumpSébastien Fabbro2013-06-243-1/+7
| | | | | Package-Manager: portage-2.2.01.22013-prefix RepoMan-Options: --force
* Added new package: charmdebug.Nicolas Bock2013-06-214-0/+44
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* sci-chemistry/shiftx: Block shiftx2 at runtimeJustin Lecher2013-06-212-0/+6
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* sci-chemistry/shiftx: Fix patch and add patch for buffer overflow fixJustin Lecher2013-06-205-7/+34
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* The announced, but forgotten, change in sci-libs/fox-4.1.2-r2 actually done.Honza Macháček2013-06-202-2/+6
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* The announced, but forgotten, change in sci-libs/etsf_io-1.0.3-r2 actually done.Honza Macháček2013-06-202-3/+7
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* sci-physics/abinit/files/6.12.3-gui-makefiles.tbz put back, its deletion was ↵Honza Macháček2013-06-202-0/+4
| | | | a mistake.
* sci-libs/trilinos: Version bump and rewriteSébastien Fabbro2013-06-193-1/+208
| | | | | Package-Manager: portage-2.2.01.22013-prefix RepoMan-Options: --force
* sci-libs/coinor-clp: Version bump and patch for mpiSébastien Fabbro2013-06-194-3/+21
| | | | Package-Manager: portage-2.2.01.22013-prefix
* For sci-libs/bigdft-abi and sci-physics/bigdft, filter LDFLAGS for cuda use ↵Honza Macháček2013-06-194-0/+10
| | | | not to break nvcc.
* To sci-libs/bigdft-abi and sci-physics/bigdft added dev-util/gdbus-codegen ↵Honza Macháček2013-06-194-0/+10
| | | | among dependencies.
* Spaces in the testing snippet of fortran code in ↵Honza Macháček2013-06-192-2/+7
| | | | sci-libs/bigdft-abi-1.0.4.ebuild protected from reformatting.
* fixed qt4 buildChristoph Junghans2013-06-182-1/+4
| | | | Package-Manager: portage-2.2.0_alpha180
* fixing manifestsSébastien Fabbro2013-06-182-0/+3
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* big fixes of metadata and package sub-herd re-distributionSébastien Fabbro2013-06-1883-427/+219
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* sci-physics/openmx upgraded to 3.7.3 with some openMP and MPI C/F90 ↵Honza Macháček2013-06-183-0/+183
| | | | juggling, previous sci-physics/openmx-3.6 preserved for the time being.
* Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sciHonza Macháček2013-06-182-2/+17
|\ | | | | | | | | Looks like I have broken something. Conflicts are reported in sci-libs/libxc. Trying desperately to recover.
| * sci-chemistry/talosn: drop upstream path in favour of ourJustin Lecher2013-06-182-2/+17
| | | | | | | | Package-Manager: portage-2.2.0_alpha180
* | The dependency of several packages on sci-libs/libxc modified to reflect ↵Honza Macháček2013-06-1827-35/+206
|\| | | | | | | correctly the recent change in the upgrade of sci-physics/abinit & friends.
| * sci-chemistry/modeller: Fix broken symlink, #473680Justin Lecher2013-06-182-1/+7
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| * sci-chemistry/mics: New packageJustin Lecher2013-06-184-0/+67
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| * sci-chemistry/talosn: New packageJustin Lecher2013-06-184-0/+75
| | | | | | | | Package-Manager: portage-2.2.0_alpha180
| * Abinit & friends upgraded to sci-physics/abinit-7.2.2. BigDFT moved from ↵Honza Macháček2013-06-1822-491/+319
| | | | | | | | sci-libs to sci-physics, sci-physics/abinit uses sci-libs/bigdft-abi instead. Usage of LIBDIR/finclude abandoned in favour of /usr/include, as mostly used upstream. Old files cleaned up.
| * Version of bigdft bumped to 1.7_pre24, moved from sci-libs to sci-physics. ↵Honza Macháček2013-06-183-0/+312
| | | | | | | | No longer used as a library by sci-physics/abinit. Usage of LIBDIR/finclude abandoned in favour of /usr/include, as used upstream.
| * Don't let openmpi override malloc, works around sandbox issue in #462602Justin Bronder2013-06-172-2/+8
| | | | | | | | Package-Manager: portage-2.1.11.62
* | Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sciHonza Macháček2013-06-1710-172/+48
|\| | | | | | | | | | | | | Trying to commit a complex change of sci-physics/abinit and its libraries, I took some time to put everything in pace so I have to pull some updates before puhing my work. Something I do not fully understand is happening. If it breaks things I will try to clean up, as soon as I understand the situation.
| * Fixed bug in jabref ebuild.Nicolas Bock2013-06-172-3/+8
| | | | | | | | Package-Manager: portage-2.2.0_alpha180
| * Renamed ebuild to conform with Gentoo Ebuild Naming Convention (TM).Nicolas Bock2013-06-172-1/+10
| | | | | | | | | | | | http://devmanual.gentoo.org/ebuild-writing/file-format/ Package-Manager: portage-2.2.0_alpha180
| * media-gfx/librecad: Cleanup and apply patch from bug #473388Sébastien Fabbro2013-06-178-170/+32
| | | | | | | | | | Package-Manager: portage-2.2.01.22013-prefix RepoMan-Options: --force
* | Abinit & friends upgraded to sci-physics/abinit-7.2.2. BigDFT moved from ↵Honza Macháček2013-06-1722-491/+319
| | | | | | | | sci-libs to sci-physics, sci-physics/abinit uses sci-libs/bigdft-abi instead. Usage of LIBDIR/finclude abandoned in favour of /usr/include, as mostly used upstream. Old files cleaned up.
* | Version of bigdft bumped to 1.7_pre24, moved from sci-libs to sci-physics. ↵Honza Macháček2013-06-173-0/+312
|/ | | | No longer used as a library by sci-physics/abinit. Usage of LIBDIR/finclude abandoned in favour of /usr/include, as used upstream.
* Mangling of the sources of sci-chemistry/freeon reduced, both for ↵Honza Macháček2013-06-174-73/+40
| | | | 2012.05.03, and for 9999.
* [sci-chemistry/nMOLDYN] Update depsAlexey Shvetsov2013-06-172-1/+7
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* [sci-chemistry/nMOLDYN] Add to overlayAlexey Shvetsov2013-06-174-0/+40
| | | | Package-Manager: portage-2.2.0_alpha179
* add missing masks for live ebuildsJustin Lecher2013-06-171-0/+5
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* dev-python/healpy: Initial importSébastien Fabbro2013-06-164-0/+54
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* dev-java/jhealpix: Initial importSébastien Fabbro2013-06-164-0/+64
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* sci-astronomy/healpix_idl: Initial importSébastien Fabbro2013-06-164-0/+59
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* sci-astronomy/healpix_cxx: Initial importSébastien Fabbro2013-06-164-0/+76
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* sci-astronomy/chealpix: Initial importSébastien Fabbro2013-06-164-0/+51
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* Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; ↵Sébastien Fabbro2013-06-1639-215/+646
|\ | | | | | | github.com:gentoo-science/sci
| * Merge branch 'fixing'Justin Lecher2013-06-1634-215/+292
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * fixing: sci-biology/twinscan: Bump to EAPI=5 and fix license sci-biology/ssaha2-bin: Version Bump; restrict license; add QA_PREBUILT for binaries sci-biology/smalt-bin: Version Bump; restrict license; add QA_PREBUILT for binaries sci-biology/sequin: Version BUmp; restrcit license; add QA_PREBUILT for binaries; install html files into sys path sci-biology/quicktree: Bump to EAPI=5 and fix license sci-biology/gap2caf: Bump to EAPI=5 and fix license; make it build with eautoreconf sci-biology/erpin: Bump to EAPI=5 and respect FLAGS / AR sci-biology/clover: Version BUmp; fixed license; respect LDFLAGS
| | * sci-biology/twinscan: Bump to EAPI=5 and fix licenseJustin Lecher2013-06-164-17/+31
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| | * sci-biology/ssaha2-bin: Version Bump; restrict license; add QA_PREBUILT for ↵Justin Lecher2013-06-164-21/+30
| | | | | | | | | | | | | | | | | | binaries Package-Manager: portage-2.2.0_alpha180