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* sci-libs/HDF5Plugin-Zstandard: depend on >=1.12.2-r5.Benda Xu2022-08-181-2/+2
| | | | | | | | 1.12.2-r3 and r4 lost the standard Gentoo plugin directory of hdf5. r5 re-enables it. Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Benda Xu <heroxbd@gentoo.org>
* sci-libs/nipype: purged dangling etelemetry requirementHorea Christian2022-08-091-1/+1
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-electronics/minipro: version bump 0.5Scott Alfter2022-08-084-9/+31
| | | | | | Signed-off-by: Scott Alfter <scott@alfter.us> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org> Closes: https://github.com/gentoo/sci/pull/1163
* dev-python/numba: drop 0.54.0, 0.55.0Andrew Ammerlaan2022-08-073-171/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/llvmlite: drop 0.37.0-r1, 0.38.0-r1Andrew Ammerlaan2022-08-075-309/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* profiles: unmask dev-python/{numba,llvmlite}Yiyang Wu2022-08-071-10/+0
| | | | | | | | | | | The newset version can depend on llvm:13 which is still in ::gentoo And there is ongoing efforts of migrating to llvm:14 See https://github.com/numba/llvmlite/pull/830 Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Closes: https://github.com/gentoo/sci/pull/1164 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/numba: add 0.56.0Yiyang Wu2022-08-072-0/+86
| | | | | Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/llvmlite: add 0.39.0Yiyang Wu2022-08-073-0/+160
| | | | | Signed-off-by: Yiyang Wu <xgreenlandforwyy@gmail.com> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-physics/spheno: tc-export ARAlexander Puck Neuwirth2022-08-072-3/+17
| | | | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de> Closes: https://github.com/gentoo/sci/pull/1162 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* README.md: further standardization of emerge commandsHorea Christian2022-07-281-4/+4
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* README.md: typo and style improvementsHorea Christian2022-07-281-3/+3
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* README.md: expanded instructions, standardized formulationHorea Christian2022-07-281-7/+17
| | | | Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-vcs/dandi-cli: version bump and versioneer dep removalHorea Christian2022-07-283-1/+81
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/anys: dependency updateHorea Christian2022-07-282-2/+3
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/nwbinspector: dependency updateHorea Christian2022-07-281-0/+1
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/dandi-schema: version bumpHorea Christian2022-07-282-0/+43
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/bruker2nifti: PYTHON_COMPAT bump 3.10Horea Christian2022-07-281-3/+3
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-vcs/datalad: version bump and test fixesHorea Christian2022-07-234-8/+246
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-physics/spheno: Fix toolchain gfortranAlexander Puck Neuwirth2022-07-222-28/+20
| | | | | | | | | We should not call gfortran directly. Instead use `FC` provided by toolchain. Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de> Closes: https://github.com/gentoo/sci/pull/1161 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-physics/feynarts: new package, add 3.11Alexander Puck Neuwirth2022-07-213-0/+49
| | | | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de> Closes: https://github.com/gentoo/sci/pull/1160 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-physics/feyncalc: new package, add 9.3.1, 9999Alexander Puck Neuwirth2022-07-214-0/+114
| | | | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de> Closes: https://github.com/gentoo/sci/pull/1159 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-physics/formcalc: new package, add 9.9, 9.10Alexander Puck Neuwirth2022-07-215-0/+177
| | | | | | Closes: https://github.com/gentoo/sci/pull/1157 Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de> Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* sci-physics/spheno: init ebuildAPN-Pucky2022-07-204-0/+89
| | | | | | Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de> Closes: https://github.com/gentoo/sci/pull/1156 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* profiles: mask dev-python/umap-learnAndrew Ammerlaan2022-07-201-0/+2
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* profiles: mask revdeps of llvmliteAndrew Ammerlaan2022-07-201-0/+3
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* profiles: mask dev-python/llvmlite for removalAndrew Ammerlaan2022-07-201-0/+5
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-java/jeuclid-core: treecleanAndrew Ammerlaan2022-07-205-93/+0
| | | | Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
* dev-python/python-igraph: add 0.9.11Andrew Ammerlaan2022-07-202-0/+54
| | | | | | Closes: https://github.com/gentoo/sci/pull/1155 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org> Co-authored-by: Anton Molyboha <anton.stay.connected@gmail.com>
* dev-python/hdmf: removed explicit version listing in PATCHESHorea Christian2022-07-191-1/+1
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/hdmf: patched upstream versioncheckHorea Christian2022-07-192-0/+24
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/pynwb: patched upstream versioncheckHorea Christian2022-07-192-0/+25
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/wraps: pyproject.toml fixesHorea Christian2022-07-182-0/+17
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/wraps: source changeHorea Christian2022-07-171-1/+1
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nipype: removed superfluous pytest argumentsHorea Christian2022-07-121-1/+1
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nipype: removed superfluous die callHorea Christian2022-07-121-2/+1
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/numcodecs: version bumpHorea Christian2022-07-122-0/+36
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/hdf5storage: added second versionHorea Christian2022-07-122-0/+25
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/hdf5storage: dropped version with broken testsHorea Christian2022-07-122-32/+0
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/hdf5storage: EAPI and PYTHON_COMPAT bumpHorea Christian2022-07-124-6/+31
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/pynwb: version bump, fixed dependency versionsHorea Christian2022-07-124-6/+46
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/hdmf: version bump, test and metadata updateHorea Christian2022-07-124-0/+39
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/pynwb: dropped ebuild with missing sourceHorea Christian2022-07-122-48/+0
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/pynwb: version bumpHorea Christian2022-07-123-0/+44
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-biology/samri: EAPI and PYTHON_COMPAT bumpHorea Christian2022-07-121-2/+2
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/itk: EAPI and PYTHON_COMPAT bumpHorea Christian2022-07-122-2/+2
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-vcs/datalad: version bumpHorea Christian2022-07-122-0/+74
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/wraps: new packageHorea Christian2022-07-124-0/+107
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* sci-libs/nipype: EAPI and PYTHON_COMPAT bump, test fixHorea Christian2022-07-112-4/+41
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-vcs/datalad: version bumpHorea Christian2022-07-113-0/+167
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>
* dev-python/traits: EAPI and PYTHON_COMPAT bumpHorea Christian2022-07-112-6/+6
| | | | | Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Horea Christian <chr@chymera.eu>