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* sci-biology/jellyfish: SLOT jellyfish to support concurrent ver. {1,2}Martin Mokrejs2018-04-213-4/+4
| | | | | | | | | | | | | | This renames the resulting binaries, pkg-config file contents, headers, and all packages currently depending on sci-biology/jellyfish. sci-biology/quorum: SLOT jellyfish to support concurrent ver. {1,2} sci-biology/Rcorrector: SLOT jellyfish to support concurrent ver. {1,2} sci-biology/SEECER: SLOT jellyfish to support concurrent ver. {1,2} sci-biology/amos: SLOT jellyfish to support concurrent ver. {1,2} sci-biology/kraken: SLOT jellyfish to support concurrent ver. {1,2} sci-biology/wgs-assembler: SLOT jellyfish to support concurrent ver. {1,2} Package-Manager: Portage-2.3.28, Repoman-2.3.9
* Update Manifests to new hashesJustin Lecher2017-12-101-2/+2
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/SEECER: execute jellyfish1 instead of jellyfishMartin Mokrejš2017-11-214-2/+130
| | | | | | | Also I wrote a few cleanup patches to expose THREADS variable and cleanup the code. Package-Manager: Portage-2.3.14, Repoman-2.3.6
* sci-biology/SEECER: 'patch -p1' and not 'patch -p0' is usedMartin Mokrejš2017-11-211-4/+4
| | | | Package-Manager: Portage-2.3.14, Repoman-2.3.6
* sci-biology/SEECER: drop trailing .ori from filenamesMartin Mokrejš2017-11-211-2/+2
| | | | Package-Manager: Portage-2.3.14, Repoman-2.3.6
* sci-biology/SEECER: remove stale .swp files from mschulzMartin Mokrejš2017-11-211-0/+1
| | | | Package-Manager: Portage-2.3.14, Repoman-2.3.6
* sci-biology/SEECER: adjust paths to work with patch -p1Martin Mokrejš2017-11-211-4/+4
| | | | | | | With bump to EAPI=6 the patch does not apply anymore due to extraneous 'SEECER-0.1.3/SEECER/'. Package-Manager: Portage-2.3.14, Repoman-2.3.6
* Consistently ident with tabsJustin Lecher2017-11-181-8/+8
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Drop leftover from CVS in HEADERJustin Lecher2017-02-251-1/+0
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/SEECER: QA fixesJustin Lecher2017-01-292-13/+12
| | | | | | | | | Bump to6 EAPI drop non active code add missing slot operator Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* metadata.xml: Set typeJustin Lecher2016-01-251-2/+2
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* metadata.xml: convert hard -> projJustin Lecher2016-01-251-1/+4
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Drop ChangeLogs in favour of commit messagesJustin Lecher2016-01-071-39/+0
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/SEECER: add einfo() message that default kmer size 17 is suboptimalMartin Mokrejš2015-11-152-2/+16
| | | | Package-Manager: portage-2.2.18
* sci-biology/SEECER: patch crappy shellscripts to at leats die on error; ↵Martin Mokrejš2015-11-133-7/+48
| | | | | | require jellyfish-1.1.11 Package-Manager: portage-2.2.18
* sci-biology/SEECER: remove hardcoded pathsMartin Mokrejš2015-11-133-0/+59
| | | | Package-Manager: portage-2.2.18
* sci-biology/SEECER: install also the main program wrapperMartin Mokrejš2015-11-122-1/+5
| | | | Package-Manager: portage-2.2.18
* Convert all $Header$ to $Id$ tags as it has be done in gentoo.gitJustin Lecher2015-08-172-2/+2
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* Revert "Gentoo does https by default now"Justin Lecher2015-06-211-1/+1
| | | | This reverts commit 98718494343af4990facdefb0033471686e975a6.
* Gentoo does https by default nowJustin Lecher2015-06-211-1/+1
| | | | Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/SEECER: added upstream 'patch'; do more proper install processMartin Mokrejš2015-04-305-36/+42
| | | | Package-Manager: portage-2.2.18
* sci-biology/SEECER: Fix licenseJustin Lecher2015-01-102-4/+8
| | | | Package-Manager: portage-2.2.15
* Initial ebuildMartin Mokrejš2015-01-074-0/+54