| Commit message (Collapse) | Author | Age | Files | Lines | |
|---|---|---|---|---|---|
| * | sci-biology/bowtie: add another upstream patch |   Martin Mokrejs | 2019-03-30 | 3 | -1/+19 |
| | | | | | | Package-Manager: Portage-2.3.62, Repoman-2.3.12 Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | ||||
| * | sci-biology/bowtie: patch --interleaved, add KEYWORDS | Martin Mokrejs | 2019-03-27 | 2 | -3/+15 |
| | | | | | | | | | | | | | | | | Do not unset contents of CFLAGS and CXXFLAGS. Thanks to ch4rr0 at https://github.com/BenLangmead/bowtie2/issues/239 Add deemed patch from https://github.com/BenLangmead/bowtie2/issues/240 Added KEYWORDS. Closes: https://bugs.gentoo.org/649824 Package-Manager: Portage-2.3.62, Repoman-2.3.12 Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | ||||
| * | sci-biology/bowtie: update SRC_URI and hash for 2.3.5 | Martin Mokrejs | 2019-03-25 | 2 | -1/+2 |
| | | | | | | Package-Manager: Portage-2.3.62, Repoman-2.3.12 Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | ||||
| * | sci-biology/bowtie: removing not working -1.2.2 ebuild | Martin Mokrejs | 2019-02-19 | 2 | -78/+0 |
| | | | | | | Package-Manager: Portage-2.3.61, Repoman-2.3.12 Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | ||||
| * | sci-biology/bowtie: removing -9999 ebuild | Martin Mokrejs | 2019-02-19 | 1 | -81/+0 |
| | | | | | | Package-Manager: Portage-2.3.61, Repoman-2.3.12 Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | ||||
| * | sci-biology/bowtie: working 1.2.2 snapshot | Martin Mokrejs | 2019-02-19 | 3 | -0/+184 |
| | | | | | | | | | | | This ebuild keeps the bundled SeqAn-1.1 sources (a library of headers) and does not insist on system-wide installed SeqAn-1.4 (for which too many patches are needed and I am unable to evaluate/apply them all). Package-Manager: Portage-2.3.61, Repoman-2.3.12 Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | ||||
| * | sci-biology/bowtie: add some compile patches from Debian | Martin Mokrejs | 2019-02-18 | 8 | -0/+236 |
| | | | | | | | | | | | Seems both bowtie1 and bowtie2 are bound too much to SeqAn-1.1 and need more patches for SeqAn-1.4. Per reports on github it seems one should be able to compile bowtie-1.2.2 using -std=c++03 (but not me). Package-Manager: Portage-2.3.59, Repoman-2.3.12 Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | ||||
| * | Moved to tree |   Justin Lecher | 2015-10-15 | 9 | -338/+0 |
| | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
| * | sci-biology/bowtie: Use 'usex' instead of defining TBB variable. |   Ted Tanberry | 2015-10-10 | 1 | -7/+1 |
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| * | sci-biology/bowtie: Version bump to 2.2.6 | Ted Tanberry | 2015-10-10 | 3 | -0/+61 |
| | | | | | dev-cpp/tbb is now supported with 'tbb' USE flag. | ||||
| * | sci-biology/bowtie: Version bump to 1.1.2 | Ted Tanberry | 2015-10-10 | 5 | -0/+91 |
| | | | | | dev-cpp/tbb is now supported with 'tbb' USE flag. | ||||
| * | Convert all $Header$ to $Id$ tags as it has be done in gentoo.git | Justin Lecher | 2015-08-17 | 4 | -4/+4 |
| | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
| * | Revert "Gentoo does https by default now" | Justin Lecher | 2015-06-21 | 1 | -1/+1 |
| | | | | | This reverts commit 98718494343af4990facdefb0033471686e975a6. | ||||
| * | Gentoo does https by default now | Justin Lecher | 2015-06-21 | 1 | -1/+1 |
| | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
| * | sci-biology/bowtie: Updating remote-id in metadata.xml | Justin Lecher | 2015-06-08 | 2 | -0/+6 |
| | | | | | Package-Manager: portage-2.2.20 | ||||
| * | sci-biology/bowtie: clarified package descriptions (bowtie1 vs. bowtie2) | Martin Mokrejš | 2015-05-01 | 4 | -3/+7 |
| | | | | | Package-Manager: portage-2.2.18 | ||||
| * | sci-biology/bowtie: version bump | Martin Mokrejš | 2015-04-27 | 4 | -2/+61 |
| | | | | | Package-Manager: portage-2.2.18 | ||||
| * | Added die to sed command for bowtie-1.1.1.ebuild | Ted Tanberry | 2015-02-07 | 1 | -1/+1 |
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| * | Removed all patches, setting CXXFLAGS and such via emake now. Fixed the ↵ | Ted Tanberry | 2015-02-06 | 5 | -80/+23 |
| | | | | | wrong manpage categories. | ||||
| * | Updated bowtie:{1,2} ebuilds to match current ebuild policy. | Ted Tanberry | 2015-02-06 | 2 | -21/+31 |
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| * | Updated sci-biology/bowtie. Bowtie1 is now properly slotted in SLOT=1. ↵ | Ted Tanberry | 2015-02-06 | 5 | -18/+99 |
| | | | | | Additional build system fixes. | ||||
| * | Sanitize ebuild header | Justin Lecher | 2014-01-30 | 1 | -1/+1 |
| | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
| * | sci-biology/bowtie: Exchange common variables, fix SRC_URI | Justin Lecher | 2013-09-28 | 3 | -7/+11 |
| | | | | | Package-Manager: portage-2.2.7 | ||||
| * | sci-biology/bowtie: fixed check for sse2 support. |   cel | 2013-09-26 | 2 | -14/+9 |
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| * | sci-biology/bowtie: Added ebuild for bowtie-2.1.0. | cel | 2013-09-25 | 4 | -0/+90 |
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| * | In main tree |   Andrey Kislyuk | 2009-03-15 | 4 | -49/+0 |
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| * | Add metadata | Andrey Kislyuk | 2009-03-06 | 1 | -0/+9 |
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| * | fix Manifest |   root | 2009-02-27 | 1 | -2/+3 |
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| * | New package sci-biology/bowtie | Andrey Kislyuk | 2009-02-27 | 3 | -0/+39 |
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