Commit message (Collapse) | Author | Age | Files | Lines | |
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* | Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; ↵ | Sébastien Fabbro | 2014-04-02 | 27 | -1936/+2829 |
|\ | | | | | | | github.com:gentoo-science/sci | ||||
| * | Lustre with patches up to kernel v3.13 | Alexey Shvetsov | 2014-04-02 | 13 | -9/+797 |
| | | | | | | | | | | Package-Manager: portage-2.2.10 RepoMan-Options: --force | ||||
| * | Lustre need more patches | Alexey Shvetsov | 2014-04-02 | 16 | -1936/+2028 |
| | | | | | | | | | | Package-Manager: portage-2.2.10 RepoMan-Options: --force | ||||
| * | sci-biology/consed: replace hardcoded CONSED_HOME path in installed perl ↵ | Martin Mokrejš | 2014-04-02 | 9 | -1/+14 |
| | | | | | | | | | | | | scripts to fix situations when user has for some reason an empty CONSED_HOME Package-Manager: portage-2.2.7 | ||||
* | | Merge pull request #212 from olifre/geant-vmc-update | Sébastien Fabbro | 2014-03-31 | 3 | -0/+68 |
|\ \ | |/ |/| | Version bump of sci-physics/geant-vmc | ||||
| * | Version bump | Oliver Freyermuth | 2014-04-01 | 3 | -0/+68 |
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* | Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci | Nicolas Bock | 2014-03-31 | 0 | -0/+0 |
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| * | sci-biology/khmer: upstream dropped the bundled zlib/bzip2 use if it is ↵ | Martin Mokrejš | 2014-03-28 | 2 | -18/+22 |
| | | | | | | | | | | | | available system-wide, upstream https://github.com/ged-lab/khmer/pull/346 Package-Manager: portage-2.2.7 | ||||
| * | sci-biology/YASRA: version bump to a version without compile errors when ↵ | Martin Mokrejš | 2014-03-28 | 3 | -3/+9 |
| | | | | | | | | | | | | gcc-4.8 is used Package-Manager: portage-2.2.7 | ||||
| * | sci-biology/RADtools: new package | Martin Mokrejš | 2014-03-28 | 5 | -0/+95 |
| | | | | | | | | Package-Manager: portage-2.2.7 | ||||
| * | sci-biology/tablet: skeleton for a new package eventually to replace current ↵ | Martin Mokrejš | 2014-03-28 | 6 | -0/+224 |
| | | | | | | | | | | | | tablet-bin package Package-Manager: portage-2.2.7 | ||||
| * | sci-biology/stacks: skeleton for a new package; needs webapp team help, ↵ | Martin Mokrejš | 2014-03-28 | 4 | -0/+69 |
| | | | | | | | | | | | | *some* Makefile's need proper DESTDIR support Package-Manager: portage-2.2.7 | ||||
| * | sci-biology/biopieces: skeleton for a new package; has it's own install.sh ↵ | Martin Mokrejš | 2014-03-28 | 5 | -0/+147 |
| | | | | | | | | | | | | script Package-Manager: portage-2.2.7 | ||||
| * | Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci | Martin Mokrejš | 2014-03-28 | 18 | -30/+216 |
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| * | | sci-biology/scan_for_matches: new package, LICENSE not explicitly avalaible ↵ | Martin Mokrejš | 2014-03-28 | 4 | -0/+46 |
| | | | | | | | | | | | | | | | | | | hence seems public-domain fits? Package-Manager: portage-2.2.7 | ||||
* | | | sci-biology/khmer: upstream dropped the bundled zlib/bzip2 use if it is ↵ | Martin Mokrejš | 2014-03-31 | 2 | -18/+22 |
| | | | | | | | | | | | | | | | | | | available system-wide, upstream https://github.com/ged-lab/khmer/pull/346 Package-Manager: portage-2.2.7 | ||||
* | | | sci-biology/YASRA: version bump to a version without compile errors when ↵ | Martin Mokrejš | 2014-03-31 | 3 | -3/+9 |
| | | | | | | | | | | | | | | | | | | gcc-4.8 is used Package-Manager: portage-2.2.7 | ||||
* | | | sci-biology/RADtools: new package | Martin Mokrejš | 2014-03-31 | 5 | -0/+95 |
| | | | | | | | | | | | | Package-Manager: portage-2.2.7 | ||||
* | | | sci-biology/tablet: skeleton for a new package eventually to replace current ↵ | Martin Mokrejš | 2014-03-31 | 6 | -0/+224 |
| | | | | | | | | | | | | | | | | | | tablet-bin package Package-Manager: portage-2.2.7 | ||||
* | | | sci-biology/stacks: skeleton for a new package; needs webapp team help, ↵ | Martin Mokrejš | 2014-03-31 | 4 | -0/+69 |
| | | | | | | | | | | | | | | | | | | *some* Makefile's need proper DESTDIR support Package-Manager: portage-2.2.7 | ||||
* | | | sci-biology/biopieces: skeleton for a new package; has it's own install.sh ↵ | Martin Mokrejš | 2014-03-31 | 5 | -0/+147 |
| | | | | | | | | | | | | | | | | | | script Package-Manager: portage-2.2.7 | ||||
* | | | sci-biology/scan_for_matches: new package, LICENSE not explicitly avalaible ↵ | Martin Mokrejš | 2014-03-31 | 4 | -0/+46 |
| | | | | | | | | | | | | | | | | | | hence seems public-domain fits? Package-Manager: portage-2.2.7 | ||||
* | | | Merge pull request #210 from ustcscgy/patch-1 | Justin | 2014-03-28 | 1 | -1/+1 |
|\ \ \ | | | | | | | | | sys-cluster/hpx-0.9.7: fix a typo | ||||
| * | | | sys-cluster/hpx-0.9.7: fix a typo | ustcscgy | 2014-03-28 | 1 | -1/+1 |
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* | | | Merge pull request #207 from olifre/genfit-live | Sébastien Fabbro | 2014-03-27 | 3 | -10/+80 |
|\ \ \ | |_|/ |/| | | Add live-ebuild, add subslot-dependencies | ||||
| * | | Unify the specialties between live and non-live ebuild so only one if-clause ↵ | Oliver Freyermuth | 2014-03-28 | 3 | -6/+11 |
| | | | | | | | | | | | | is needed, fixes code duplication. | ||||
| * | | Add live-ebuild, add subslot-dependency on sci-physics/root (depends on ↵ | Oliver Freyermuth | 2014-03-25 | 3 | -10/+75 |
| | | | | | | | | | | | | #505358 to become effective) and dev-libs/boost . | ||||
* | | | sci-misc/fitscut: Switch to EAPI5, autotools-utils, fixed for prefix | Sébastien Fabbro | 2014-03-27 | 4 | -15/+19 |
| | | | | | | | | | | | | Package-Manager: portage-2.2.8-prefix | ||||
* | | | Merge pull request #208 from olifre/vgm-subslot | Justin | 2014-03-27 | 2 | -1/+5 |
|\ \ \ | | | | | | | | | Add subslot-dependency on sci-physics/root, rebuilding is needed on each... | ||||
| * | | | Add subslot-dependency on sci-physics/root, rebuilding is needed on each ↵ | Oliver Freyermuth | 2014-03-27 | 2 | -1/+5 |
| | | | | | | | | | | | | | | | | ROOT version string change. For more details c.f. #505358 . | ||||
* | | | | Merge pull request #209 from olifre/geant-vmc | Justin | 2014-03-27 | 4 | -3/+8 |
|\ \ \ \ | |/ / / |/| | | | Add subslot-dependency on sci-physics/root, rebuilding is needed on each... | ||||
| * | | | Add subslot-dependency on sci-physics/root, rebuilding is needed on each ↵ | Oliver Freyermuth | 2014-03-27 | 4 | -3/+8 |
|/ / / | | | | | | | | | | ROOT version string change. For more details c.f. #505358 . | ||||
* | | | sci-chemistry/ball: Import tree changes | Justin Lecher | 2014-03-27 | 2 | -11/+27 |
| | | | | | | | | | | | | Package-Manager: portage-2.2.10 | ||||
* | | | sci-chemistry/chemBuild: Version Bump | Justin Lecher | 2014-03-26 | 3 | -0/+63 |
| | | | | | | | | | | | | Package-Manager: portage-2.2.9-r1 | ||||
* | | | sci-chemistry/specView: Version BUmp | Justin Lecher | 2014-03-26 | 3 | -0/+94 |
| |/ |/| | | | | | Package-Manager: portage-2.2.9-r1 | ||||
* | | sci-biology/ncbi-tools++: add deps on jpeg-turbo | Martin Mokrejš | 2014-03-25 | 1 | -1/+1 |
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* | | Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sci | Martin Mokrejš | 2014-03-25 | 3 | -0/+147 |
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| * | sci-libs/mkl: Version Bump | Justin Lecher | 2014-03-24 | 3 | -0/+147 |
| | | | | | | | | Package-Manager: portage-2.2.9-r1 | ||||
* | | sci-biology/cutadapt: switch to use newer source code location, add support ↵ | Martin Mokrejš | 2014-03-25 | 4 | -2/+60 |
|/ | | | | for github snapshots, version bump | ||||
* | Merge remote-tracking branch 'github/master' | Justin Lecher | 2014-03-24 | 0 | -0/+0 |
|\ | | | | | | | | | * github/master: media-gfx/librecad: version bump 2.0.3 | ||||
| * | media-gfx/librecad: version bump 2.0.3 | Dongxu Li | 2014-03-23 | 3 | -2/+5 |
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* | | sci-biology/khmer: Also drop sphinx as build requirement | Justin Lecher | 2014-03-24 | 3 | -0/+6 |
| | | | | | | | | Package-Manager: portage-2.2.9-r1 | ||||
* | | media-gfx/librecad: version bump 2.0.3 | Dongxu Li | 2014-03-24 | 3 | -2/+5 |
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* | | sci-biology/staden: fix ESVN_REPO_URI to include trailing 'src/' so that we ↵ | Martin Mokrejš | 2014-03-24 | 2 | -4/+5 |
| | | | | | | | | | | | | do not have to change ''. Thanks to Justin Lercher for the patch. Package-Manager: portage-2.2.7 | ||||
* | | sci-biology/ngs_backbone: added an ebuild for latest release | Martin Mokrejš | 2014-03-24 | 5 | -0/+179 |
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* | | sci-biology/bambino: added missing license file | Martin Mokrejš | 2014-03-24 | 1 | -0/+32 |
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* | | sci-biology/mgblast: initial ebuild but while it needs an old version of ↵ | Martin Mokrejš | 2014-03-24 | 4 | -0/+67 |
| | | | | | | | | ncbi-tools source tree to build ... it is not tested yet | ||||
* | | dev-python/psubprocess: a wrapper utility to split tasks in parallel | Martin Mokrejš | 2014-03-24 | 4 | -0/+40 |
| | | | | | | | | Package-Manager: portage-2.2.7 | ||||
* | | sci-biology/BamView: dropped KEYWORDS | Martin Mokrejš | 2014-03-24 | 2 | -1/+5 |
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* | | sci-biology/BamView: not sure if we need a separate package; is said to be ↵ | Martin Mokrejš | 2014-03-24 | 3 | -0/+31 |
| | | | | | | | | part of Artemis bundle |