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* Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; ↵Sébastien Fabbro2014-04-0227-1936/+2829
|\ | | | | | | github.com:gentoo-science/sci
| * Lustre with patches up to kernel v3.13Alexey Shvetsov2014-04-0213-9/+797
| | | | | | | | | | Package-Manager: portage-2.2.10 RepoMan-Options: --force
| * Lustre need more patchesAlexey Shvetsov2014-04-0216-1936/+2028
| | | | | | | | | | Package-Manager: portage-2.2.10 RepoMan-Options: --force
| * sci-biology/consed: replace hardcoded CONSED_HOME path in installed perl ↵Martin Mokrejš2014-04-029-1/+14
| | | | | | | | | | | | scripts to fix situations when user has for some reason an empty CONSED_HOME Package-Manager: portage-2.2.7
* | Merge pull request #212 from olifre/geant-vmc-updateSébastien Fabbro2014-03-313-0/+68
|\ \ | |/ |/| Version bump of sci-physics/geant-vmc
| * Version bumpOliver Freyermuth2014-04-013-0/+68
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* Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sciNicolas Bock2014-03-310-0/+0
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| * sci-biology/khmer: upstream dropped the bundled zlib/bzip2 use if it is ↵Martin Mokrejš2014-03-282-18/+22
| | | | | | | | | | | | available system-wide, upstream https://github.com/ged-lab/khmer/pull/346 Package-Manager: portage-2.2.7
| * sci-biology/YASRA: version bump to a version without compile errors when ↵Martin Mokrejš2014-03-283-3/+9
| | | | | | | | | | | | gcc-4.8 is used Package-Manager: portage-2.2.7
| * sci-biology/RADtools: new packageMartin Mokrejš2014-03-285-0/+95
| | | | | | | | Package-Manager: portage-2.2.7
| * sci-biology/tablet: skeleton for a new package eventually to replace current ↵Martin Mokrejš2014-03-286-0/+224
| | | | | | | | | | | | tablet-bin package Package-Manager: portage-2.2.7
| * sci-biology/stacks: skeleton for a new package; needs webapp team help, ↵Martin Mokrejš2014-03-284-0/+69
| | | | | | | | | | | | *some* Makefile's need proper DESTDIR support Package-Manager: portage-2.2.7
| * sci-biology/biopieces: skeleton for a new package; has it's own install.sh ↵Martin Mokrejš2014-03-285-0/+147
| | | | | | | | | | | | script Package-Manager: portage-2.2.7
| * Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sciMartin Mokrejš2014-03-2818-30/+216
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| * | sci-biology/scan_for_matches: new package, LICENSE not explicitly avalaible ↵Martin Mokrejš2014-03-284-0/+46
| | | | | | | | | | | | | | | | | | hence seems public-domain fits? Package-Manager: portage-2.2.7
* | | sci-biology/khmer: upstream dropped the bundled zlib/bzip2 use if it is ↵Martin Mokrejš2014-03-312-18/+22
| | | | | | | | | | | | | | | | | | available system-wide, upstream https://github.com/ged-lab/khmer/pull/346 Package-Manager: portage-2.2.7
* | | sci-biology/YASRA: version bump to a version without compile errors when ↵Martin Mokrejš2014-03-313-3/+9
| | | | | | | | | | | | | | | | | | gcc-4.8 is used Package-Manager: portage-2.2.7
* | | sci-biology/RADtools: new packageMartin Mokrejš2014-03-315-0/+95
| | | | | | | | | | | | Package-Manager: portage-2.2.7
* | | sci-biology/tablet: skeleton for a new package eventually to replace current ↵Martin Mokrejš2014-03-316-0/+224
| | | | | | | | | | | | | | | | | | tablet-bin package Package-Manager: portage-2.2.7
* | | sci-biology/stacks: skeleton for a new package; needs webapp team help, ↵Martin Mokrejš2014-03-314-0/+69
| | | | | | | | | | | | | | | | | | *some* Makefile's need proper DESTDIR support Package-Manager: portage-2.2.7
* | | sci-biology/biopieces: skeleton for a new package; has it's own install.sh ↵Martin Mokrejš2014-03-315-0/+147
| | | | | | | | | | | | | | | | | | script Package-Manager: portage-2.2.7
* | | sci-biology/scan_for_matches: new package, LICENSE not explicitly avalaible ↵Martin Mokrejš2014-03-314-0/+46
| | | | | | | | | | | | | | | | | | hence seems public-domain fits? Package-Manager: portage-2.2.7
* | | Merge pull request #210 from ustcscgy/patch-1Justin2014-03-281-1/+1
|\ \ \ | | | | | | | | sys-cluster/hpx-0.9.7: fix a typo
| * | | sys-cluster/hpx-0.9.7: fix a typoustcscgy2014-03-281-1/+1
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* | | Merge pull request #207 from olifre/genfit-liveSébastien Fabbro2014-03-273-10/+80
|\ \ \ | |_|/ |/| | Add live-ebuild, add subslot-dependencies
| * | Unify the specialties between live and non-live ebuild so only one if-clause ↵Oliver Freyermuth2014-03-283-6/+11
| | | | | | | | | | | | is needed, fixes code duplication.
| * | Add live-ebuild, add subslot-dependency on sci-physics/root (depends on ↵Oliver Freyermuth2014-03-253-10/+75
| | | | | | | | | | | | #505358 to become effective) and dev-libs/boost .
* | | sci-misc/fitscut: Switch to EAPI5, autotools-utils, fixed for prefixSébastien Fabbro2014-03-274-15/+19
| | | | | | | | | | | | Package-Manager: portage-2.2.8-prefix
* | | Merge pull request #208 from olifre/vgm-subslotJustin2014-03-272-1/+5
|\ \ \ | | | | | | | | Add subslot-dependency on sci-physics/root, rebuilding is needed on each...
| * | | Add subslot-dependency on sci-physics/root, rebuilding is needed on each ↵Oliver Freyermuth2014-03-272-1/+5
| | | | | | | | | | | | | | | | ROOT version string change. For more details c.f. #505358 .
* | | | Merge pull request #209 from olifre/geant-vmcJustin2014-03-274-3/+8
|\ \ \ \ | |/ / / |/| | | Add subslot-dependency on sci-physics/root, rebuilding is needed on each...
| * | | Add subslot-dependency on sci-physics/root, rebuilding is needed on each ↵Oliver Freyermuth2014-03-274-3/+8
|/ / / | | | | | | | | | ROOT version string change. For more details c.f. #505358 .
* | | sci-chemistry/ball: Import tree changesJustin Lecher2014-03-272-11/+27
| | | | | | | | | | | | Package-Manager: portage-2.2.10
* | | sci-chemistry/chemBuild: Version BumpJustin Lecher2014-03-263-0/+63
| | | | | | | | | | | | Package-Manager: portage-2.2.9-r1
* | | sci-chemistry/specView: Version BUmpJustin Lecher2014-03-263-0/+94
| |/ |/| | | | | Package-Manager: portage-2.2.9-r1
* | sci-biology/ncbi-tools++: add deps on jpeg-turboMartin Mokrejš2014-03-251-1/+1
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* | Merge branch 'master' of git+ssh://git.overlays.gentoo.org/proj/sciMartin Mokrejš2014-03-253-0/+147
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| * sci-libs/mkl: Version BumpJustin Lecher2014-03-243-0/+147
| | | | | | | | Package-Manager: portage-2.2.9-r1
* | sci-biology/cutadapt: switch to use newer source code location, add support ↵Martin Mokrejš2014-03-254-2/+60
|/ | | | for github snapshots, version bump
* Merge remote-tracking branch 'github/master'Justin Lecher2014-03-240-0/+0
|\ | | | | | | | | * github/master: media-gfx/librecad: version bump 2.0.3
| * media-gfx/librecad: version bump 2.0.3Dongxu Li2014-03-233-2/+5
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* | sci-biology/khmer: Also drop sphinx as build requirementJustin Lecher2014-03-243-0/+6
| | | | | | | | Package-Manager: portage-2.2.9-r1
* | media-gfx/librecad: version bump 2.0.3Dongxu Li2014-03-243-2/+5
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* | sci-biology/staden: fix ESVN_REPO_URI to include trailing 'src/' so that we ↵Martin Mokrejš2014-03-242-4/+5
| | | | | | | | | | | | do not have to change ''. Thanks to Justin Lercher for the patch. Package-Manager: portage-2.2.7
* | sci-biology/ngs_backbone: added an ebuild for latest releaseMartin Mokrejš2014-03-245-0/+179
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* | sci-biology/bambino: added missing license fileMartin Mokrejš2014-03-241-0/+32
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* | sci-biology/mgblast: initial ebuild but while it needs an old version of ↵Martin Mokrejš2014-03-244-0/+67
| | | | | | | | ncbi-tools source tree to build ... it is not tested yet
* | dev-python/psubprocess: a wrapper utility to split tasks in parallelMartin Mokrejš2014-03-244-0/+40
| | | | | | | | Package-Manager: portage-2.2.7
* | sci-biology/BamView: dropped KEYWORDSMartin Mokrejš2014-03-242-1/+5
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* | sci-biology/BamView: not sure if we need a separate package; is said to be ↵Martin Mokrejš2014-03-243-0/+31
| | | | | | | | part of Artemis bundle