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* sci-biology/BBmap: version bumpMartin Mokrejš2017-01-285-3/+47
* sci-biology/picard-9999: reintroduce src_prepare(), drop ant dependenciesMartin Mokrejš2017-01-241-3/+6
* sci-biology/picard-9999: do not apply the 2.2.2-build.xml.patchMartin Mokrejš2017-01-241-5/+0
* Revert "sci-biology/picard-9999: apply the 2.2.2 patch to drop bundled htsjdk"Martin Mokrejš2017-01-241-1/+1
* sci-biology/picard-9999: apply the 2.2.2 patch to drop bundled htsjdkMartin Mokrejš2017-01-241-1/+1
* sci-biology/picard: still not working ebuild for current gradle-based build s...Martin Mokrejš2017-01-211-2/+2
* sci-biology/picard: adjust to test directory now moved elsewhere in src streeMartin Mokrejš2017-01-201-1/+1
* sci-biology/eval: drop EPYTHON variable which was empty and let fix_shebangs ...Martin Mokrejš2017-01-171-1/+1
* Merge remote-tracking branch 'github/master'Justin Lecher2017-01-121-1/+1
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| * use my name instead of online monikerHorea Christian2017-01-091-1/+1
* | sci-biology/picard-2.8.1: version bump, do not compile tests by defaultMartin Mokrejš2017-01-122-1/+61
* | sci-biology/picard: upstream moved from ant to gradle build systemMartin Mokrejš2017-01-114-2/+62
* | sci-biology/wise: add keywordsMartin Mokrejš2017-01-101-1/+1
* | sci-biology/wise: fix slot operatorMartin Mokrejš2017-01-101-1/+1
* | sci-biology/wise: version bump, add patches from wise_2.4.1-19_debianMartin Mokrejš2017-01-1013-8/+1359
* | sci-biology/plinkseq: remove dangling symlinksMartin Mokrejš2017-01-102-0/+2
* | sci-biology/gemini: add links to existing docsMartin Mokrejš2017-01-101-0/+3
* | sci-biology/plinkseq: note a file collisionMartin Mokrejš2017-01-102-2/+4
* | sci-biology/vcflib: disctinguish various openmp commandline switchesMartin Mokrejš2017-01-101-4/+15
* | sci-biology/trinityrnaseq: slightly relax required version numbersMartin Mokrejš2017-01-103-6/+6
* | sci-biology/quorum: lightly relax required versionsMartin Mokrejš2017-01-102-5/+6
* | sci-biology/repeatmasker: improve installation processMartin Mokrejš2017-01-101-5/+5
* | sci-biology/megahit: distinguish openmp compiler switchesMartin Mokrejš2017-01-101-1/+13
* | sci-biology/idba: distinguish openmp cflags, fix compile and install stepsMartin Mokrejš2017-01-102-5/+42
* | sci-biology/ESTate: avoid file collisionsMartin Mokrejš2017-01-101-6/+6
* | sci-biology/abyss: removing old, 2.0.2 in main repo alreadyMartin Mokrejš2017-01-105-121/+0
* | sci-biology/grabix: install README.mdMartin Mokrejš2017-01-091-0/+1
* | sci-biology/gemini: more deps neededMartin Mokrejš2017-01-091-0/+4
* | sci-biology/grabix: new packageMartin Mokrejš2017-01-092-0/+39
* | sci-biology/gemini: add missing RDEPENDMartin Mokrejš2017-01-091-2/+3
* | sci-biology/vt: new package, uses static libsMartin Mokrejš2017-01-092-0/+63
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* sci-biology/idba: document upstream opened issue numberMartin Mokrejš2017-01-082-4/+4
* sci-biology/eval: fix shebang line according to bug #602580Martin Mokrejš2017-01-081-1/+4
* Version bumps for sci-biology/{aghermann,cnrun} (#717)Andrei Zavada2017-01-054-10/+9
* sci-biology/fsl: fixed outstanding FSLDIR and GUI issues (#716)Horea Christian2017-01-042-3/+10
* Merge remote-tracking branch 'github/master'Justin Lecher2016-12-233-2/+36
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| * Bru2nii (#715)Horea Christian2016-12-223-2/+36
* | sci-biology/rmblast: fix bug #579248 by disabling testsuite compilationMartin Mokrejš2016-12-196-0/+939
* | sci-biology/bamtools: removing since 2.4.1 landed in main treeMartin Mokrejš2016-12-191-32/+0
* | sci-biology/mosaik: removing since latest version landed in main treeMartin Mokrejš2016-12-193-37/+0
* | sci-biology/mosaik: removing old since newer landed in main treeMartin Mokrejš2016-12-192-31/+0
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* License missing and fetch restrictedJustin Lecher2016-12-173-52/+0
* Merge remote-tracking branch 'github/master'Justin Lecher2016-12-173-0/+34
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| * sci-biology/ncbi-genome-download: new ebuild (#712)freeh4cker2016-12-163-0/+34
* | sci-biology/conrad: install startup file for a jar fileMartin Mokrejš2016-12-131-0/+2
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* sci-biology/kat: respect sse CPU USE flagsMartin Mokrejš2016-12-091-3/+7
* sci-biology/kat:Martin Mokrejš2016-12-091-6/+14
* sci-biology/jellyfish: version bump; respect sse CPU USE flagMartin Mokrejš2016-12-095-3/+81
* sci-biology/freebayes: fix package herd nameMartin Mokrejš2016-12-091-2/+2
* sci-biology/grass: introduce -9999 live version, drop oldMartin Mokrejš2016-12-074-43/+309