| Commit message (Collapse) | Author | Age | Files | Lines | ||
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| * | | | | | sci-biology/wgs-assembler: improve package description |   Martin Mokrejš | 2016-04-08 | 1 | -2/+2 | |
| | | | | | | | | | | | | | | | | | | | | | Package-Manager: portage-2.2.28 | |||||
| * | | | | | sci-biology/sailfish: version bump; noted bundled 3rd-party code | Martin Mokrejš | 2016-04-08 | 3 | -3/+13 | |
| | | | | | | | | | | | | | | | | | | | | | Package-Manager: portage-2.2.28 | |||||
| * | | | | | sci-libs/pmx: change repo uri. its on github since 2015 |   Alexey Shvetsov | 2016-04-06 | 1 | -4/+4 | |
| | | | | | | | | | | | | | | | | | | | | | Package-Manager: portage-2.2.28 | |||||
| * | | | | | sci-biology/prinseq-lite: new package, needs more perl modules | Martin Mokrejš | 2016-04-03 | 3 | -0/+49 | |
| | | | | | | | | | | | | | | | | | | | | | Package-Manager: portage-2.2.28 | |||||
| * | | | | | sci-biology/MolBioLib: does not build, contacted upstream | Martin Mokrejš | 2016-04-02 | 1 | -1/+1 | |
| | |_|_|/ |/| | | | | | | | | | | | Package-Manager: portage-2.2.28 | |||||
| * | | | | sci-biology/MolBioLib: yet another package with bundled samtools, bamtools etc. | Martin Mokrejš | 2016-04-01 | 3 | -0/+44 | |
| | | | | | | | | | | | | | | | | | Package-Manager: portage-2.2.28 | |||||
| * | | | | dev-python/hdf5storage: Version bump |   Marius Brehler | 2016-04-01 | 2 | -0/+23 | |
| | | | | | | | | | | | | | | | | | Package-Manager: portage-2.2.26 | |||||
| * | | | | sci-biology/roche454ace2caf: Drop keywords, Bump to EAPI=6 | Marius Brehler | 2016-04-01 | 1 | -3/+3 | |
| | | | | | | | | | | | | | | | | | Package-Manager: portage-2.2.26 | |||||
| * | | | | sci-biology/gap2caf: Drop keywords | Marius Brehler | 2016-04-01 | 1 | -2/+2 | |
| | | | | | | | | | | | | | | | | | Package-Manager: portage-2.2.26 | |||||
| * | | | | sci-biology/staden: Drop keywords since keywords were droped for staden_doc | Marius Brehler | 2016-04-01 | 1 | -1/+1 | |
| | | | | | | | | | | | | | | | | | Package-Manager: portage-2.2.26 | |||||
| * | | | | sci-biology/staden: Fix copyright and dependcies | Marius Brehler | 2016-04-01 | 2 | -4/+4 | |
| | | | | | | | | | | | | | | | | | | | | | Package-Manager: portage-2.2.26 RepoMan-Options: --force | |||||
| * | | | | sci-libs/clfft: Version bump | Marius Brehler | 2016-04-01 | 2 | -0/+54 | |
| | | | | | | | | | | | | | | | | | Package-Manager: portage-2.2.26 | |||||
| * | | | | sci-libs/armadillo: Version bump to 6.600.5 | Marius Brehler | 2016-04-01 | 2 | -0/+122 | |
| | | | | | | | | | | | | | | | | | Package-Manager: portage-2.2.26 | |||||
| * | | | | sci-libs/armadillo: Version bump from 6.200.3 to 6.200.5 | Marius Brehler | 2016-04-01 | 2 | -1/+1 | |
| | | | | | | | | | | | | | | | | | Package-Manager: portage-2.2.26 | |||||
| * | | | | dev-python/matplotlib2tikz: Version bump | Marius Brehler | 2016-04-01 | 2 | -0/+25 | |
| | | | | | | | | | | | | | | | | | Package-Manager: portage-2.2.26 | |||||
| * | | | | sci-biology/bamtools: version bump; still suffers gentoo bug #550144 | Martin Mokrejš | 2016-04-01 | 3 | -0/+55 | |
| | | | | | | | | | | | | | | | | | Package-Manager: portage-2.2.28 | |||||
| * | | | | sci-biology/reapr: quick and dirty Debian patches do not help me with ↵ | Martin Mokrejš | 2016-04-01 | 3 | -3/+277 | |
| | | | | | | | | | | | | | | | | | | | | | | | | | sci-biology/bamtools-2.3.0 installed site-wide; the bundled bamtools do not start to compile and tehrefore reapr linking steps fail while using using system-wide incompatible version Package-Manager: portage-2.2.28 | |||||
| * | | | | sci-biology/karect: new package | Martin Mokrejš | 2016-03-31 | 3 | -0/+46 | |
| | | | | | | | | | | | | | | | | | Package-Manager: portage-2.2.28 | |||||
| * | | | | sci-biology/cross_genome: polish ebuild syntax | Martin Mokrejš | 2016-03-30 | 1 | -1/+1 | |
| | | | | | | | | | | | | | | | | | Package-Manager: portage-2.2.28 | |||||
| * | | | | sci-biology/CONTIGuator: version bump; added KEYWORDS because DEPENDencies ↵ | Martin Mokrejš | 2016-03-30 | 3 | -17/+32 | |
| | | | | | | | | | | | | | | | | | | | | | | | | | are in the tree now Package-Manager: portage-2.2.28 | |||||
| * | | | | sci-biology/arachne: new package; does not compile (upstream contacted) and ↵ | Martin Mokrejš | 2016-03-30 | 3 | -0/+54 | |
| | | | | | | | | | | | | | | | | | | | | | | | | | the LICENSE is not exactly MIT? Package-Manager: portage-2.2.28 | |||||
| * | | | | sci-biology/cap3-bin: fix version number to match version generated at ↵ | Martin Mokrejš | 2016-03-30 | 3 | -0/+43 | |
| | | | | | | | | | | | | | | | | | | | | | | | | | runtime; added new version Package-Manager: portage-2.2.28 | |||||
| * | | | | sci-biology/reapr: new package with bundled samtools, bamtools, tabix ↵ | Martin Mokrejš | 2016-03-30 | 3 | -0/+70 | |
| | | | | | | | | | | | | | | | | | | | | | | | | | (nowadays part of samtools) and other binaries; does not link probably due to a clash of symbols with my system-wide installed -lbamtools Package-Manager: portage-2.2.28 | |||||
| * | | | | sci-biology/exomiser-bin: improve ebuild, fix LICENSE, a 19GB files should ↵ | Martin Mokrejš | 2016-03-30 | 3 | -24/+34 | |
| | | | | | | | | | | | | | | | | | | | | | | | | | be fetched manually but the ebuild should get access to it, unpack it and install as the files make grounding for a usable workspace Package-Manager: portage-2.2.28 | |||||
| * | | | | sci-biology/DisEMBL: added DEPENDency on tisean | Martin Mokrejš | 2016-03-30 | 1 | -1/+1 | |
| | | | | | | | | | | | | | | | | | Package-Manager: portage-2.2.28 | |||||
| * | | | | sci-biology/TransDecoder: version bump | Martin Mokrejš | 2016-03-30 | 3 | -0/+106 | |
| | | | | | | | | | | | | | | | | | Package-Manager: portage-2.2.28 | |||||
| * | | | | fixing /# : $/# $/ | Martin Mokrejš | 2016-03-30 | 1 | -1/+1 | |
| | | | | | | | | | | | | | | | | | Package-Manager: portage-2.2.28 | |||||
| * | | | | fixing /# : $/# $/ | Martin Mokrejš | 2016-03-30 | 1 | -1/+1 | |
| | | | | | | | | | | | | | | | | | Package-Manager: portage-2.2.28 | |||||
| * | | | | fixing /# : $/# $/ | Martin Mokrejš | 2016-03-30 | 3 | -0/+38 | |
| | | | | | | | | | | | | | | | | | Package-Manager: portage-2.2.28 | |||||
| * | | | | Merge branch 'master' of git+ssh://git.gentoo.org/proj/sci | Martin Mokrejš | 2016-03-30 | 3 | -0/+305 | |
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| | * \ \ \ | Merge branch 'master' of git+ssh://git.gentoo.org/proj/sci |   Honza Macháček | 2016-03-30 | 7 | -13/+108 | |
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| | * | | | | | sci-chemistry/nwchem version bumped to 6.6 with minor ebuild improvements; ↵ | Honza Macháček | 2016-03-30 | 3 | -0/+305 | |
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Infiniband support should compile, source patched to allow unique names for all atoms Package-Manager: portage-2.2.27 | |||||
| * | | | | | | sci-biology/perga: added some LICENSE, fix CFLAGS | Martin Mokrejš | 2016-03-30 | 2 | -0/+48 | |
| | |/ / / / |/| | | | | | | | | | | | | | | Package-Manager: portage-2.2.28 | |||||
| * | | | | | sci-biology/artemis: install docs, cleanup ebuild and bring it in sync with ↵ | Martin Mokrejš | 2016-03-30 | 2 | -6/+16 | |
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | sci-biology/act-bin and sci-biology/artemis-9999 Package-Manager: portage-2.2.28 | |||||
| * | | | | | sci-biology/artemis-bin: install docs, cleanup ebuild and bring it in sync ↵ | Martin Mokrejš | 2016-03-30 | 1 | -1/+1 | |
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | with sci-biology/act-bin and sci-biology/artemis-9999 Package-Manager: portage-2.2.28 | |||||
| * | | | | | sci-biology/artemis-bin: install docs, cleanup ebuild and bring it in sync ↵ | Martin Mokrejš | 2016-03-30 | 2 | -6/+25 | |
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | with sci-biology/act-bin and sci-biology/artemis-9999 Package-Manager: portage-2.2.28 | |||||
| * | | | | | sci-biology/act-bin: new java package with upstream binaries | Martin Mokrejš | 2016-03-30 | 3 | -0/+66 | |
| |/ / / / | | | | | | | | | | | | | Package-Manager: portage-2.2.28 | |||||
| * | | | | sci-biology/scaffold_builder: clarify description | Martin Mokrejš | 2016-03-30 | 1 | -1/+1 | |
| | | | | | | | | | | | | | | | | | Package-Manager: portage-2.2.28 | |||||
| * | | | | sci-biology/staden_doc: removing KEYWORDS as upstream just fixed generation ↵ | Martin Mokrejš | 2016-03-29 | 1 | -1/+1 | |
| | | | | | | | | | | | | | | | | | | | | | | | | | of the manual pages, currently available code does not work Package-Manager: portage-2.2.28 | |||||
| * | | | | Don't check metadata.xml |   Justin Lecher | 2016-03-29 | 1 | -3/+3 | |
| | | | | | | | | | | | | | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | |||||
| * | | | | Merge branch 'heroxbd-master' | Justin Lecher | 2016-03-29 | 1 | -1/+1 | |
| |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * heroxbd-master: sys-cluster/modules: fix typo. /etc/modulefiles. GitHub: closes gentoo-science/sci#559 | |||||
| | * | | | | sys-cluster/modules: fix typo. /etc/modulefiles. |   Benda Xu | 2016-03-29 | 1 | -1/+1 | |
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| * | | | | Don't exit but false | Justin Lecher | 2016-03-29 | 1 | -1/+1 | |
| | | | | | | | | | | | | | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | |||||
| * | | | | sci-biology/perlprimer: Follow pkgmove of perl-tk | Justin Lecher | 2016-03-29 | 2 | -5/+1 | |
| | | | | | | | | | | | | | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | |||||
| * | | | | profiles: Mask sci-biology/perlprimer due to unknown revdep | Justin Lecher | 2016-03-29 | 1 | -0/+4 | |
| | | | | | | | | | | | | | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | |||||
| * | | | | sci-biology/manatee-igs: Fix typo in deps | Justin Lecher | 2016-03-29 | 1 | -3/+3 | |
| | | | | | | | | | | | | | | | | | | | | | | | | | * Bump to EAPI=6 Signed-off-by: Justin Lecher <jlec@gentoo.org> | |||||
| * | | | | sci-biology/ONTO-PERL: Fix typo in deps | Justin Lecher | 2016-03-29 | 1 | -3/+3 | |
| | | | | | | | | | | | | | | | | | | | | | | | | | * Bump to EAPI=6 Signed-off-by: Justin Lecher <jlec@gentoo.org> | |||||
| * | | | | Merge remote-tracking branch 'github/master' | Justin Lecher | 2016-03-29 | 18 | -147/+187 | |
| |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * github/master: sci-libs/calculix-ccx-2.10 sci-libs/calculix-cgx-2.10 version bump (ref #602) dev-python/ffnet: Add new ffnet and ffnetui ebuilds sci-physics/genfit: Change live-ebuild to github. | |||||
| | * \ \ \ | Merge pull request #603 from apieum/calculix-2.10 | Justin Lecher | 2016-03-25 | 10 | -135/+98 | |
| | |\ \ \ \ | | |_|_|/ | |/| | | | sci-libs/calculix-ccx-2.10 and sci-libs/calculix-cgx-2.10: version bump #602 | |||||
| | | * | | | sci-libs/calculix-ccx-2.10 sci-libs/calculix-cgx-2.10 version bump (ref #602) |   Grégory Salvan | 2016-03-22 | 10 | -135/+98 | |
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